Strain Fitness in Serratia liquefaciens MT49 around IAI46_03520

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03515 and IAI46_03520 overlap by 4 nucleotidesIAI46_03520 and IAI46_03525 overlap by 4 nucleotidesIAI46_03525 and IAI46_03530 are separated by 199 nucleotides IAI46_03515: IAI46_03515 - protein transport protein HofC, at 761,287 to 762,486 _03515 IAI46_03520: IAI46_03520 - type II secretion system protein GspE, at 762,483 to 763,931 _03520 IAI46_03525: IAI46_03525 - prepilin peptidase-dependent pilin, at 763,928 to 764,377 _03525 IAI46_03530: IAI46_03530 - carboxylating nicotinate-nucleotide diphosphorylase, at 764,577 to 765,467 _03530 Position (kb) 762 763 764Strain fitness (log2 ratio) -2 -1 0 1 2at 761.605 kb on - strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.793 kb on - strand, within IAI46_03515at 761.793 kb on - strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.799 kb on - strand, within IAI46_03515at 761.799 kb on - strand, within IAI46_03515at 761.878 kb on - strand, within IAI46_03515at 761.956 kb on + strand, within IAI46_03515at 761.980 kb on - strand, within IAI46_03515at 762.100 kb on + strand, within IAI46_03515at 762.100 kb on + strand, within IAI46_03515at 762.101 kb on - strand, within IAI46_03515at 762.101 kb on - strand, within IAI46_03515at 762.173 kb on - strand, within IAI46_03515at 762.233 kb on - strand, within IAI46_03515at 762.233 kb on - strand, within IAI46_03515at 762.235 kb on + strand, within IAI46_03515at 762.236 kb on - strand, within IAI46_03515at 762.242 kb on - strand, within IAI46_03515at 762.242 kb on - strand, within IAI46_03515at 762.284 kb on - strand, within IAI46_03515at 762.336 kb on + strand, within IAI46_03515at 762.527 kb on - strandat 762.528 kb on + strandat 762.528 kb on + strandat 762.528 kb on + strandat 762.529 kb on - strandat 762.685 kb on + strand, within IAI46_03520at 762.685 kb on + strand, within IAI46_03520at 762.685 kb on + strand, within IAI46_03520at 762.686 kb on - strand, within IAI46_03520at 762.686 kb on - strand, within IAI46_03520at 762.688 kb on - strand, within IAI46_03520at 762.688 kb on - strand, within IAI46_03520at 762.703 kb on + strand, within IAI46_03520at 762.820 kb on - strand, within IAI46_03520at 762.824 kb on + strand, within IAI46_03520at 762.824 kb on + strand, within IAI46_03520at 762.825 kb on - strand, within IAI46_03520at 762.825 kb on - strand, within IAI46_03520at 762.891 kb on - strand, within IAI46_03520at 762.891 kb on - strand, within IAI46_03520at 763.051 kb on - strand, within IAI46_03520at 763.051 kb on - strand, within IAI46_03520at 763.053 kb on + strand, within IAI46_03520at 763.054 kb on - strand, within IAI46_03520at 763.148 kb on + strand, within IAI46_03520at 763.149 kb on - strand, within IAI46_03520at 763.183 kb on + strand, within IAI46_03520at 763.184 kb on - strand, within IAI46_03520at 763.184 kb on - strand, within IAI46_03520at 763.185 kb on + strand, within IAI46_03520at 763.249 kb on - strand, within IAI46_03520at 763.286 kb on + strand, within IAI46_03520at 763.387 kb on + strand, within IAI46_03520at 763.387 kb on + strand, within IAI46_03520at 763.387 kb on + strand, within IAI46_03520at 763.391 kb on + strand, within IAI46_03520at 763.391 kb on + strand, within IAI46_03520at 763.391 kb on + strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.567 kb on + strand, within IAI46_03520at 763.568 kb on - strand, within IAI46_03520at 763.568 kb on - strand, within IAI46_03520at 763.568 kb on - strand, within IAI46_03520at 763.568 kb on - strand, within IAI46_03520at 763.626 kb on + strand, within IAI46_03520at 763.628 kb on + strand, within IAI46_03520at 763.629 kb on - strand, within IAI46_03520at 763.709 kb on + strand, within IAI46_03520at 763.809 kb on + strandat 763.810 kb on - strandat 763.813 kb on - strandat 763.813 kb on - strandat 763.868 kb on + strandat 763.869 kb on - strandat 763.869 kb on - strandat 763.885 kb on + strandat 763.897 kb on - strandat 763.897 kb on - strandat 763.897 kb on - strandat 763.902 kb on - strandat 763.997 kb on - strand, within IAI46_03525at 764.136 kb on + strand, within IAI46_03525at 764.137 kb on - strand, within IAI46_03525at 764.230 kb on + strand, within IAI46_03525at 764.230 kb on + strand, within IAI46_03525at 764.231 kb on - strand, within IAI46_03525at 764.231 kb on - strand, within IAI46_03525at 764.232 kb on + strand, within IAI46_03525at 764.232 kb on + strand, within IAI46_03525at 764.232 kb on + strand, within IAI46_03525at 764.233 kb on - strand, within IAI46_03525at 764.233 kb on - strand, within IAI46_03525at 764.233 kb on - strand, within IAI46_03525at 764.233 kb on - strand, within IAI46_03525at 764.280 kb on + strand, within IAI46_03525at 764.280 kb on + strand, within IAI46_03525at 764.281 kb on - strand, within IAI46_03525at 764.281 kb on - strand, within IAI46_03525at 764.290 kb on - strand, within IAI46_03525at 764.299 kb on + strand, within IAI46_03525at 764.299 kb on + strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.300 kb on - strand, within IAI46_03525at 764.303 kb on + strand, within IAI46_03525at 764.303 kb on + strand, within IAI46_03525at 764.303 kb on + strand, within IAI46_03525at 764.303 kb on + strand, within IAI46_03525at 764.304 kb on - strand, within IAI46_03525at 764.304 kb on - strand, within IAI46_03525at 764.304 kb on - strand, within IAI46_03525at 764.304 kb on - strand, within IAI46_03525at 764.315 kb on + strand, within IAI46_03525at 764.315 kb on + strand, within IAI46_03525at 764.316 kb on - strand, within IAI46_03525at 764.348 kb on + strandat 764.348 kb on + strandat 764.413 kb on + strandat 764.413 kb on + strandat 764.456 kb on + strandat 764.578 kb on + strandat 764.579 kb on - strandat 764.579 kb on - strandat 764.579 kb on - strandat 764.639 kb on + strandat 764.640 kb on - strandat 764.640 kb on - strandat 764.640 kb on - strandat 764.640 kb on - strandat 764.642 kb on - strandat 764.774 kb on + strand, within IAI46_03530at 764.774 kb on + strand, within IAI46_03530at 764.774 kb on + strand, within IAI46_03530at 764.774 kb on + strand, within IAI46_03530at 764.775 kb on - strand, within IAI46_03530at 764.775 kb on - strand, within IAI46_03530at 764.901 kb on + strand, within IAI46_03530

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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761,605 - IAI46_03515 0.27 +0.1
761,792 + IAI46_03515 0.42 -0.4
761,792 + IAI46_03515 0.42 +0.9
761,792 + IAI46_03515 0.42 -0.7
761,793 - IAI46_03515 0.42 +0.3
761,793 - IAI46_03515 0.42 -0.2
761,798 + IAI46_03515 0.43 -0.2
761,798 + IAI46_03515 0.43 -0.2
761,798 + IAI46_03515 0.43 -0.1
761,798 + IAI46_03515 0.43 +1.6
761,799 - IAI46_03515 0.43 -0.4
761,799 - IAI46_03515 0.43 +0.1
761,878 - IAI46_03515 0.49 +0.1
761,956 + IAI46_03515 0.56 -0.1
761,980 - IAI46_03515 0.58 -0.2
762,100 + IAI46_03515 0.68 +0.3
762,100 + IAI46_03515 0.68 +0.2
762,101 - IAI46_03515 0.68 -0.2
762,101 - IAI46_03515 0.68 +0.4
762,173 - IAI46_03515 0.74 -0.5
762,233 - IAI46_03515 0.79 +0.4
762,233 - IAI46_03515 0.79 -0.6
762,235 + IAI46_03515 0.79 -0.3
762,236 - IAI46_03515 0.79 +0.3
762,242 - IAI46_03515 0.80 +0.8
762,242 - IAI46_03515 0.80 -0.5
762,284 - IAI46_03515 0.83 -0.4
762,336 + IAI46_03515 0.87 -0.1
762,527 - +1.2
762,528 + +1.3
762,528 + -0.1
762,528 + -0.3
762,529 - +0.6
762,685 + IAI46_03520 0.14 +0.2
762,685 + IAI46_03520 0.14 +0.6
762,685 + IAI46_03520 0.14 +0.7
762,686 - IAI46_03520 0.14 -0.4
762,686 - IAI46_03520 0.14 +0.1
762,688 - IAI46_03520 0.14 +0.2
762,688 - IAI46_03520 0.14 +0.7
762,703 + IAI46_03520 0.15 +0.1
762,820 - IAI46_03520 0.23 -0.2
762,824 + IAI46_03520 0.24 -0.2
762,824 + IAI46_03520 0.24 +0.3
762,825 - IAI46_03520 0.24 -0.1
762,825 - IAI46_03520 0.24 +0.2
762,891 - IAI46_03520 0.28 +0.7
762,891 - IAI46_03520 0.28 +0.0
763,051 - IAI46_03520 0.39 +0.1
763,051 - IAI46_03520 0.39 -0.8
763,053 + IAI46_03520 0.39 +0.5
763,054 - IAI46_03520 0.39 +0.4
763,148 + IAI46_03520 0.46 -0.8
763,149 - IAI46_03520 0.46 -0.5
763,183 + IAI46_03520 0.48 -0.1
763,184 - IAI46_03520 0.48 -2.4
763,184 - IAI46_03520 0.48 -0.9
763,185 + IAI46_03520 0.48 +0.4
763,249 - IAI46_03520 0.53 -0.2
763,286 + IAI46_03520 0.55 -0.5
763,387 + IAI46_03520 0.62 +0.6
763,387 + IAI46_03520 0.62 +1.4
763,387 + IAI46_03520 0.62 +0.0
763,391 + IAI46_03520 0.63 +0.8
763,391 + IAI46_03520 0.63 -0.7
763,391 + IAI46_03520 0.63 +0.3
763,392 - IAI46_03520 0.63 +0.6
763,392 - IAI46_03520 0.63 +0.8
763,392 - IAI46_03520 0.63 -0.3
763,392 - IAI46_03520 0.63 -0.6
763,392 - IAI46_03520 0.63 +0.5
763,392 - IAI46_03520 0.63 -1.1
763,567 + IAI46_03520 0.75 -0.8
763,568 - IAI46_03520 0.75 -0.0
763,568 - IAI46_03520 0.75 -0.2
763,568 - IAI46_03520 0.75 +0.7
763,568 - IAI46_03520 0.75 +0.9
763,626 + IAI46_03520 0.79 +0.2
763,628 + IAI46_03520 0.79 +0.9
763,629 - IAI46_03520 0.79 +0.0
763,709 + IAI46_03520 0.85 -1.0
763,809 + -0.3
763,810 - -0.5
763,813 - +0.3
763,813 - -0.3
763,868 + +0.1
763,869 - +0.3
763,869 - +0.5
763,885 + -0.2
763,897 - +1.9
763,897 - +0.6
763,897 - +1.1
763,902 - -0.4
763,997 - IAI46_03525 0.15 -0.2
764,136 + IAI46_03525 0.46 +0.7
764,137 - IAI46_03525 0.46 -1.0
764,230 + IAI46_03525 0.67 +0.2
764,230 + IAI46_03525 0.67 +0.2
764,231 - IAI46_03525 0.67 -0.1
764,231 - IAI46_03525 0.67 +0.5
764,232 + IAI46_03525 0.68 -0.7
764,232 + IAI46_03525 0.68 +0.1
764,232 + IAI46_03525 0.68 -0.2
764,233 - IAI46_03525 0.68 -0.7
764,233 - IAI46_03525 0.68 +0.3
764,233 - IAI46_03525 0.68 -0.5
764,233 - IAI46_03525 0.68 +0.1
764,280 + IAI46_03525 0.78 -0.4
764,280 + IAI46_03525 0.78 +1.5
764,281 - IAI46_03525 0.78 +0.2
764,281 - IAI46_03525 0.78 +0.9
764,290 - IAI46_03525 0.80 -0.6
764,299 + IAI46_03525 0.82 +0.5
764,299 + IAI46_03525 0.82 +0.4
764,300 - IAI46_03525 0.83 +0.8
764,300 - IAI46_03525 0.83 +0.3
764,300 - IAI46_03525 0.83 +0.9
764,300 - IAI46_03525 0.83 +0.1
764,300 - IAI46_03525 0.83 -0.4
764,300 - IAI46_03525 0.83 +0.4
764,300 - IAI46_03525 0.83 +1.2
764,303 + IAI46_03525 0.83 -0.3
764,303 + IAI46_03525 0.83 -0.9
764,303 + IAI46_03525 0.83 -0.1
764,303 + IAI46_03525 0.83 +0.7
764,304 - IAI46_03525 0.84 +0.8
764,304 - IAI46_03525 0.84 +0.3
764,304 - IAI46_03525 0.84 +0.2
764,304 - IAI46_03525 0.84 +0.1
764,315 + IAI46_03525 0.86 -0.1
764,315 + IAI46_03525 0.86 +0.3
764,316 - IAI46_03525 0.86 -0.9
764,348 + +0.1
764,348 + +0.3
764,413 + -0.7
764,413 + +1.5
764,456 + +0.8
764,578 + +0.0
764,579 - -0.2
764,579 - +0.3
764,579 - -0.5
764,639 + -0.3
764,640 - +0.4
764,640 - -1.1
764,640 - -0.5
764,640 - +0.1
764,642 - -0.2
764,774 + IAI46_03530 0.22 -0.2
764,774 + IAI46_03530 0.22 +0.9
764,774 + IAI46_03530 0.22 -0.9
764,774 + IAI46_03530 0.22 +0.1
764,775 - IAI46_03530 0.22 -0.3
764,775 - IAI46_03530 0.22 -0.7
764,901 + IAI46_03530 0.36 -1.5

Or see this region's nucleotide sequence