Strain Fitness in Serratia liquefaciens MT49 around IAI46_03380

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03375 and IAI46_03380 are separated by 2 nucleotidesIAI46_03380 and IAI46_03385 are separated by 216 nucleotides IAI46_03375: IAI46_03375 - acetolactate synthase 3 large subunit, at 731,016 to 732,734 _03375 IAI46_03380: IAI46_03380 - acetolactate synthase small subunit, at 732,737 to 733,228 _03380 IAI46_03385: IAI46_03385 - catabolite repressor/activator, at 733,445 to 734,449 _03385 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 731.805 kb on + strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.806 kb on - strand, within IAI46_03375at 731.806 kb on - strand, within IAI46_03375at 731.806 kb on - strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.874 kb on - strand, within IAI46_03375at 731.874 kb on - strand, within IAI46_03375at 731.895 kb on + strand, within IAI46_03375at 731.895 kb on + strand, within IAI46_03375at 731.915 kb on - strand, within IAI46_03375at 731.937 kb on - strand, within IAI46_03375at 732.074 kb on + strand, within IAI46_03375at 732.075 kb on - strand, within IAI46_03375at 732.183 kb on + strand, within IAI46_03375at 732.183 kb on + strand, within IAI46_03375at 732.188 kb on + strand, within IAI46_03375at 732.189 kb on - strand, within IAI46_03375at 732.189 kb on - strand, within IAI46_03375at 732.189 kb on - strand, within IAI46_03375at 732.228 kb on + strand, within IAI46_03375at 732.228 kb on + strand, within IAI46_03375at 732.228 kb on + strand, within IAI46_03375at 732.229 kb on - strand, within IAI46_03375at 732.229 kb on - strand, within IAI46_03375at 732.229 kb on - strand, within IAI46_03375at 732.232 kb on - strand, within IAI46_03375at 732.366 kb on - strand, within IAI46_03375at 732.405 kb on + strand, within IAI46_03375at 732.406 kb on - strand, within IAI46_03375at 732.424 kb on + strand, within IAI46_03375at 732.425 kb on - strand, within IAI46_03375at 732.425 kb on - strand, within IAI46_03375at 732.425 kb on - strand, within IAI46_03375at 732.434 kb on + strand, within IAI46_03375at 732.434 kb on + strand, within IAI46_03375at 732.437 kb on + strand, within IAI46_03375at 732.438 kb on - strand, within IAI46_03375at 732.444 kb on + strand, within IAI46_03375at 732.444 kb on + strand, within IAI46_03375at 732.445 kb on - strand, within IAI46_03375at 732.480 kb on + strand, within IAI46_03375at 732.481 kb on - strand, within IAI46_03375at 732.481 kb on - strand, within IAI46_03375at 732.481 kb on - strand, within IAI46_03375at 732.504 kb on + strand, within IAI46_03375at 732.504 kb on + strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.507 kb on - strand, within IAI46_03375at 732.546 kb on + strand, within IAI46_03375at 732.572 kb on + strandat 732.631 kb on + strandat 732.670 kb on - strandat 732.818 kb on + strand, within IAI46_03380at 732.818 kb on + strand, within IAI46_03380at 732.818 kb on + strand, within IAI46_03380at 732.819 kb on - strand, within IAI46_03380at 732.859 kb on + strand, within IAI46_03380at 732.860 kb on - strand, within IAI46_03380at 732.860 kb on - strand, within IAI46_03380at 732.931 kb on + strand, within IAI46_03380at 732.931 kb on + strand, within IAI46_03380at 732.931 kb on + strand, within IAI46_03380at 733.094 kb on + strand, within IAI46_03380at 733.095 kb on - strand, within IAI46_03380at 733.213 kb on + strandat 733.245 kb on - strandat 733.329 kb on + strandat 733.330 kb on - strandat 733.333 kb on + strandat 733.349 kb on + strandat 733.490 kb on - strandat 733.499 kb on + strandat 733.499 kb on + strandat 733.527 kb on - strandat 733.541 kb on - strandat 733.583 kb on + strand, within IAI46_03385at 733.583 kb on + strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.670 kb on + strand, within IAI46_03385at 733.671 kb on - strand, within IAI46_03385at 733.671 kb on - strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.876 kb on + strand, within IAI46_03385at 733.969 kb on + strand, within IAI46_03385at 733.969 kb on + strand, within IAI46_03385at 733.994 kb on + strand, within IAI46_03385at 733.994 kb on + strand, within IAI46_03385at 733.994 kb on + strand, within IAI46_03385at 734.085 kb on - strand, within IAI46_03385at 734.091 kb on - strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.098 kb on + strand, within IAI46_03385at 734.099 kb on - strand, within IAI46_03385at 734.099 kb on - strand, within IAI46_03385at 734.099 kb on - strand, within IAI46_03385at 734.102 kb on + strand, within IAI46_03385at 734.102 kb on + strand, within IAI46_03385at 734.102 kb on + strand, within IAI46_03385

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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731,805 + IAI46_03375 0.46 +1.3
731,805 + IAI46_03375 0.46 -1.0
731,805 + IAI46_03375 0.46 -0.6
731,805 + IAI46_03375 0.46 -0.3
731,806 - IAI46_03375 0.46 +1.1
731,806 - IAI46_03375 0.46 +0.5
731,806 - IAI46_03375 0.46 +2.6
731,873 + IAI46_03375 0.50 +0.2
731,873 + IAI46_03375 0.50 +0.6
731,873 + IAI46_03375 0.50 -0.2
731,873 + IAI46_03375 0.50 +0.3
731,874 - IAI46_03375 0.50 -0.0
731,874 - IAI46_03375 0.50 +0.2
731,895 + IAI46_03375 0.51 +0.6
731,895 + IAI46_03375 0.51 +0.9
731,915 - IAI46_03375 0.52 -0.2
731,937 - IAI46_03375 0.54 -0.1
732,074 + IAI46_03375 0.62 -0.5
732,075 - IAI46_03375 0.62 -0.8
732,183 + IAI46_03375 0.68 +0.5
732,183 + IAI46_03375 0.68 -0.6
732,188 + IAI46_03375 0.68 +0.1
732,189 - IAI46_03375 0.68 -0.4
732,189 - IAI46_03375 0.68 -0.8
732,189 - IAI46_03375 0.68 +0.2
732,228 + IAI46_03375 0.71 -0.4
732,228 + IAI46_03375 0.71 +0.4
732,228 + IAI46_03375 0.71 +0.5
732,229 - IAI46_03375 0.71 +0.7
732,229 - IAI46_03375 0.71 +0.5
732,229 - IAI46_03375 0.71 -1.4
732,232 - IAI46_03375 0.71 +1.1
732,366 - IAI46_03375 0.79 +0.4
732,405 + IAI46_03375 0.81 -1.3
732,406 - IAI46_03375 0.81 +0.2
732,424 + IAI46_03375 0.82 +0.1
732,425 - IAI46_03375 0.82 +0.6
732,425 - IAI46_03375 0.82 +0.8
732,425 - IAI46_03375 0.82 +0.4
732,434 + IAI46_03375 0.82 +0.6
732,434 + IAI46_03375 0.82 +0.1
732,437 + IAI46_03375 0.83 -0.1
732,438 - IAI46_03375 0.83 +0.0
732,444 + IAI46_03375 0.83 -0.7
732,444 + IAI46_03375 0.83 +1.5
732,445 - IAI46_03375 0.83 -1.0
732,480 + IAI46_03375 0.85 -1.0
732,481 - IAI46_03375 0.85 +0.5
732,481 - IAI46_03375 0.85 +0.5
732,481 - IAI46_03375 0.85 -0.3
732,504 + IAI46_03375 0.87 +1.3
732,504 + IAI46_03375 0.87 -0.4
732,505 - IAI46_03375 0.87 -0.2
732,505 - IAI46_03375 0.87 +0.4
732,505 - IAI46_03375 0.87 +0.6
732,505 - IAI46_03375 0.87 -0.4
732,505 - IAI46_03375 0.87 +0.0
732,507 - IAI46_03375 0.87 -0.8
732,546 + IAI46_03375 0.89 -0.1
732,572 + -0.0
732,631 + -0.0
732,670 - +1.0
732,818 + IAI46_03380 0.16 +0.2
732,818 + IAI46_03380 0.16 +1.0
732,818 + IAI46_03380 0.16 +0.3
732,819 - IAI46_03380 0.17 -0.0
732,859 + IAI46_03380 0.25 +0.0
732,860 - IAI46_03380 0.25 +0.5
732,860 - IAI46_03380 0.25 -1.0
732,931 + IAI46_03380 0.39 +0.0
732,931 + IAI46_03380 0.39 +1.5
732,931 + IAI46_03380 0.39 -0.0
733,094 + IAI46_03380 0.73 +0.3
733,095 - IAI46_03380 0.73 +0.6
733,213 + +0.1
733,245 - +0.4
733,329 + -1.4
733,330 - +0.4
733,333 + +0.4
733,349 + +0.2
733,490 - +0.9
733,499 + +0.7
733,499 + +0.4
733,527 - +0.3
733,541 - +0.3
733,583 + IAI46_03385 0.14 -0.4
733,583 + IAI46_03385 0.14 +0.5
733,584 - IAI46_03385 0.14 +0.8
733,584 - IAI46_03385 0.14 -0.6
733,584 - IAI46_03385 0.14 +0.7
733,670 + IAI46_03385 0.22 +0.3
733,671 - IAI46_03385 0.22 +0.8
733,671 - IAI46_03385 0.22 +0.5
733,688 + IAI46_03385 0.24 -0.9
733,688 + IAI46_03385 0.24 -0.1
733,688 + IAI46_03385 0.24 +0.1
733,689 - IAI46_03385 0.24 +0.3
733,689 - IAI46_03385 0.24 -0.5
733,689 - IAI46_03385 0.24 -0.9
733,876 + IAI46_03385 0.43 +0.6
733,969 + IAI46_03385 0.52 -0.6
733,969 + IAI46_03385 0.52 +1.5
733,994 + IAI46_03385 0.55 -0.5
733,994 + IAI46_03385 0.55 +0.5
733,994 + IAI46_03385 0.55 +0.9
734,085 - IAI46_03385 0.64 +0.8
734,091 - IAI46_03385 0.64 +0.1
734,098 + IAI46_03385 0.65 +0.5
734,098 + IAI46_03385 0.65 -2.8
734,098 + IAI46_03385 0.65 +0.1
734,098 + IAI46_03385 0.65 +0.4
734,098 + IAI46_03385 0.65 -0.2
734,099 - IAI46_03385 0.65 +0.5
734,099 - IAI46_03385 0.65 -0.3
734,099 - IAI46_03385 0.65 +0.4
734,102 + IAI46_03385 0.65 -1.5
734,102 + IAI46_03385 0.65 -0.9
734,102 + IAI46_03385 0.65 +1.5

Or see this region's nucleotide sequence