Strain Fitness in Serratia liquefaciens MT49 around IAI46_03305

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03295 and IAI46_03300 are separated by 111 nucleotidesIAI46_03300 and IAI46_03305 are separated by 103 nucleotidesIAI46_03305 and IAI46_03310 are separated by 114 nucleotides IAI46_03295: IAI46_03295 - acetolactate synthase large subunit, at 711,288 to 712,982 _03295 IAI46_03300: IAI46_03300 - ilvB operon leader peptide IvbL, at 713,094 to 713,192 _03300 IAI46_03305: IAI46_03305 - thiamine ABC transporter ATP-binding protein ThiQ, at 713,296 to 714,000 _03305 IAI46_03310: IAI46_03310 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 714,115 to 715,719 _03310 Position (kb) 713 714 715Strain fitness (log2 ratio) -2 -1 0 1at 712.300 kb on + strand, within IAI46_03295at 712.333 kb on + strand, within IAI46_03295at 712.563 kb on + strand, within IAI46_03295at 712.564 kb on - strand, within IAI46_03295at 712.600 kb on + strand, within IAI46_03295at 712.600 kb on + strand, within IAI46_03295at 712.600 kb on + strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.677 kb on - strand, within IAI46_03295at 712.743 kb on - strand, within IAI46_03295at 712.743 kb on - strand, within IAI46_03295at 712.787 kb on + strand, within IAI46_03295at 712.788 kb on - strand, within IAI46_03295at 712.818 kb on + strandat 712.818 kb on + strandat 712.819 kb on - strandat 712.819 kb on - strandat 712.829 kb on + strandat 712.829 kb on + strandat 712.953 kb on - strandat 713.160 kb on + strand, within IAI46_03300at 713.160 kb on + strand, within IAI46_03300at 713.160 kb on + strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.163 kb on + strand, within IAI46_03300at 713.202 kb on + strandat 713.202 kb on + strandat 713.202 kb on + strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.278 kb on + strandat 713.279 kb on - strandat 713.453 kb on - strand, within IAI46_03305at 713.509 kb on + strand, within IAI46_03305at 713.938 kb on - strandat 713.969 kb on + strandat 713.970 kb on - strandat 713.975 kb on + strandat 713.975 kb on + strandat 713.976 kb on - strandat 713.995 kb on + strandat 714.000 kb on + strandat 714.000 kb on + strandat 714.000 kb on + strandat 714.000 kb on + strandat 714.001 kb on - strandat 714.001 kb on - strandat 714.001 kb on - strandat 714.001 kb on - strandat 714.001 kb on - strandat 714.001 kb on - strandat 714.001 kb on - strandat 714.047 kb on - strandat 714.059 kb on + strandat 714.060 kb on - strandat 714.067 kb on + strandat 714.067 kb on + strandat 714.067 kb on + strandat 714.067 kb on + strandat 714.067 kb on + strandat 714.067 kb on + strandat 714.068 kb on - strandat 714.153 kb on + strandat 714.154 kb on - strandat 714.240 kb on - strandat 714.240 kb on - strandat 714.240 kb on - strandat 714.240 kb on - strandat 714.308 kb on - strand, within IAI46_03310at 714.308 kb on - strand, within IAI46_03310at 714.414 kb on + strand, within IAI46_03310at 714.417 kb on - strand, within IAI46_03310at 714.457 kb on + strand, within IAI46_03310at 714.458 kb on - strand, within IAI46_03310at 714.465 kb on - strand, within IAI46_03310at 714.465 kb on - strand, within IAI46_03310at 714.465 kb on - strand, within IAI46_03310at 714.691 kb on + strand, within IAI46_03310at 714.691 kb on + strand, within IAI46_03310at 714.891 kb on + strand, within IAI46_03310at 714.892 kb on - strand, within IAI46_03310

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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712,300 + IAI46_03295 0.60 -0.2
712,333 + IAI46_03295 0.62 -0.0
712,563 + IAI46_03295 0.75 -0.2
712,564 - IAI46_03295 0.75 -0.1
712,600 + IAI46_03295 0.77 +0.3
712,600 + IAI46_03295 0.77 +0.3
712,600 + IAI46_03295 0.77 -0.6
712,601 - IAI46_03295 0.77 -0.1
712,601 - IAI46_03295 0.77 -1.0
712,601 - IAI46_03295 0.77 +1.4
712,601 - IAI46_03295 0.77 +1.5
712,677 - IAI46_03295 0.82 -1.2
712,743 - IAI46_03295 0.86 +0.2
712,743 - IAI46_03295 0.86 -0.9
712,787 + IAI46_03295 0.88 +1.6
712,788 - IAI46_03295 0.88 -0.0
712,818 + +0.3
712,818 + -0.4
712,819 - -0.5
712,819 - -0.5
712,829 + -0.8
712,829 + +0.7
712,953 - -0.3
713,160 + IAI46_03300 0.67 -0.5
713,160 + IAI46_03300 0.67 -2.0
713,160 + IAI46_03300 0.67 +1.3
713,161 - IAI46_03300 0.68 -0.1
713,161 - IAI46_03300 0.68 +0.2
713,161 - IAI46_03300 0.68 -0.0
713,161 - IAI46_03300 0.68 -0.0
713,161 - IAI46_03300 0.68 +0.1
713,161 - IAI46_03300 0.68 -0.4
713,163 + IAI46_03300 0.70 -0.5
713,202 + -0.0
713,202 + +0.2
713,202 + +0.2
713,203 - +0.0
713,203 - -0.0
713,203 - -0.0
713,203 - -0.8
713,203 - +0.0
713,278 + +0.2
713,279 - -0.7
713,453 - IAI46_03305 0.22 +0.2
713,509 + IAI46_03305 0.30 +0.5
713,938 - +0.2
713,969 + +0.8
713,970 - +0.6
713,975 + +0.1
713,975 + -0.7
713,976 - -0.3
713,995 + -0.8
714,000 + -0.0
714,000 + -0.8
714,000 + +1.0
714,000 + -0.4
714,001 - -0.1
714,001 - +1.6
714,001 - +0.3
714,001 - +0.5
714,001 - -0.7
714,001 - +1.0
714,001 - +0.5
714,047 - -0.1
714,059 + +0.2
714,060 - +0.4
714,067 + +0.4
714,067 + -0.3
714,067 + -1.2
714,067 + +0.5
714,067 + -0.4
714,067 + +0.2
714,068 - -0.2
714,153 + +1.3
714,154 - +0.8
714,240 - +1.7
714,240 - +0.8
714,240 - +0.0
714,240 - +0.3
714,308 - IAI46_03310 0.12 +1.1
714,308 - IAI46_03310 0.12 -0.2
714,414 + IAI46_03310 0.19 +0.2
714,417 - IAI46_03310 0.19 +1.0
714,457 + IAI46_03310 0.21 +0.0
714,458 - IAI46_03310 0.21 +0.4
714,465 - IAI46_03310 0.22 +0.4
714,465 - IAI46_03310 0.22 -0.5
714,465 - IAI46_03310 0.22 +0.3
714,691 + IAI46_03310 0.36 +0.5
714,691 + IAI46_03310 0.36 +0.3
714,891 + IAI46_03310 0.48 +0.6
714,892 - IAI46_03310 0.48 +0.6

Or see this region's nucleotide sequence