Strain Fitness in Serratia liquefaciens MT49 around IAI46_03295

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03285 and IAI46_03290 are separated by 147 nucleotidesIAI46_03290 and IAI46_03295 are separated by 3 nucleotidesIAI46_03295 and IAI46_03300 are separated by 111 nucleotidesIAI46_03300 and IAI46_03305 are separated by 103 nucleotides IAI46_03285: IAI46_03285 - DedA family protein, at 710,076 to 710,843 _03285 IAI46_03290: IAI46_03290 - acetolactate synthase small subunit, at 710,991 to 711,284 _03290 IAI46_03295: IAI46_03295 - acetolactate synthase large subunit, at 711,288 to 712,982 _03295 IAI46_03300: IAI46_03300 - ilvB operon leader peptide IvbL, at 713,094 to 713,192 _03300 IAI46_03305: IAI46_03305 - thiamine ABC transporter ATP-binding protein ThiQ, at 713,296 to 714,000 _03305 Position (kb) 711 712 713Strain fitness (log2 ratio) -2 -1 0 1at 710.299 kb on - strand, within IAI46_03285at 710.402 kb on + strand, within IAI46_03285at 710.490 kb on - strand, within IAI46_03285at 710.490 kb on - strand, within IAI46_03285at 710.519 kb on + strand, within IAI46_03285at 710.539 kb on - strand, within IAI46_03285at 710.539 kb on - strand, within IAI46_03285at 710.606 kb on + strand, within IAI46_03285at 710.606 kb on + strand, within IAI46_03285at 710.633 kb on - strand, within IAI46_03285at 710.633 kb on - strand, within IAI46_03285at 710.778 kb on + strandat 710.778 kb on + strandat 710.779 kb on - strandat 710.808 kb on + strandat 710.899 kb on + strandat 710.899 kb on + strandat 710.899 kb on + strandat 710.899 kb on + strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.900 kb on - strandat 710.903 kb on + strandat 710.903 kb on + strandat 710.904 kb on - strandat 710.904 kb on - strandat 710.907 kb on + strandat 710.907 kb on + strandat 710.907 kb on + strandat 710.907 kb on + strandat 710.908 kb on - strandat 710.908 kb on - strandat 710.908 kb on - strandat 710.911 kb on + strandat 710.962 kb on + strandat 710.969 kb on + strandat 710.992 kb on + strandat 710.992 kb on + strandat 710.993 kb on - strandat 711.048 kb on + strand, within IAI46_03290at 711.118 kb on - strand, within IAI46_03290at 711.118 kb on - strand, within IAI46_03290at 711.118 kb on - strand, within IAI46_03290at 711.233 kb on + strand, within IAI46_03290at 711.233 kb on + strand, within IAI46_03290at 711.233 kb on + strand, within IAI46_03290at 711.233 kb on + strand, within IAI46_03290at 711.233 kb on + strand, within IAI46_03290at 711.234 kb on - strand, within IAI46_03290at 711.234 kb on - strand, within IAI46_03290at 711.237 kb on + strand, within IAI46_03290at 711.238 kb on - strand, within IAI46_03290at 711.238 kb on - strand, within IAI46_03290at 711.289 kb on + strandat 711.351 kb on - strandat 711.353 kb on + strandat 711.476 kb on + strand, within IAI46_03295at 711.524 kb on - strand, within IAI46_03295at 711.524 kb on - strand, within IAI46_03295at 711.890 kb on + strand, within IAI46_03295at 711.933 kb on - strand, within IAI46_03295at 711.987 kb on + strand, within IAI46_03295at 711.988 kb on - strand, within IAI46_03295at 711.996 kb on + strand, within IAI46_03295at 711.997 kb on - strand, within IAI46_03295at 712.030 kb on - strand, within IAI46_03295at 712.030 kb on - strand, within IAI46_03295at 712.030 kb on - strand, within IAI46_03295at 712.143 kb on + strand, within IAI46_03295at 712.144 kb on - strand, within IAI46_03295at 712.300 kb on + strand, within IAI46_03295at 712.333 kb on + strand, within IAI46_03295at 712.563 kb on + strand, within IAI46_03295at 712.564 kb on - strand, within IAI46_03295at 712.600 kb on + strand, within IAI46_03295at 712.600 kb on + strand, within IAI46_03295at 712.600 kb on + strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.601 kb on - strand, within IAI46_03295at 712.677 kb on - strand, within IAI46_03295at 712.743 kb on - strand, within IAI46_03295at 712.743 kb on - strand, within IAI46_03295at 712.787 kb on + strand, within IAI46_03295at 712.788 kb on - strand, within IAI46_03295at 712.818 kb on + strandat 712.818 kb on + strandat 712.819 kb on - strandat 712.819 kb on - strandat 712.829 kb on + strandat 712.829 kb on + strandat 712.953 kb on - strandat 713.160 kb on + strand, within IAI46_03300at 713.160 kb on + strand, within IAI46_03300at 713.160 kb on + strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.161 kb on - strand, within IAI46_03300at 713.163 kb on + strand, within IAI46_03300at 713.202 kb on + strandat 713.202 kb on + strandat 713.202 kb on + strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.203 kb on - strandat 713.278 kb on + strandat 713.279 kb on - strandat 713.453 kb on - strand, within IAI46_03305at 713.509 kb on + strand, within IAI46_03305at 713.938 kb on - strandat 713.969 kb on + strandat 713.970 kb on - strandat 713.975 kb on + strandat 713.975 kb on + strandat 713.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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710,299 - IAI46_03285 0.29 +0.2
710,402 + IAI46_03285 0.42 +1.7
710,490 - IAI46_03285 0.54 +0.7
710,490 - IAI46_03285 0.54 +0.6
710,519 + IAI46_03285 0.58 -1.9
710,539 - IAI46_03285 0.60 -0.2
710,539 - IAI46_03285 0.60 +1.2
710,606 + IAI46_03285 0.69 -0.3
710,606 + IAI46_03285 0.69 -0.4
710,633 - IAI46_03285 0.73 +0.5
710,633 - IAI46_03285 0.73 -0.6
710,778 + +0.8
710,778 + -0.5
710,779 - -0.7
710,808 + +0.1
710,899 + -0.4
710,899 + +0.2
710,899 + +0.2
710,899 + +0.2
710,900 - -0.2
710,900 - +0.2
710,900 - +0.0
710,900 - +0.7
710,900 - -0.4
710,900 - -0.1
710,900 - +1.1
710,900 - +0.6
710,903 + +1.3
710,903 + -0.4
710,904 - -0.6
710,904 - -0.0
710,907 + +0.4
710,907 + -0.5
710,907 + +0.1
710,907 + +0.1
710,908 - -0.2
710,908 - -0.0
710,908 - -0.6
710,911 + -0.3
710,962 + +0.0
710,969 + +0.1
710,992 + -0.4
710,992 + -0.6
710,993 - +0.6
711,048 + IAI46_03290 0.19 -0.2
711,118 - IAI46_03290 0.43 +0.3
711,118 - IAI46_03290 0.43 -0.3
711,118 - IAI46_03290 0.43 +0.2
711,233 + IAI46_03290 0.82 +0.6
711,233 + IAI46_03290 0.82 +0.2
711,233 + IAI46_03290 0.82 +0.6
711,233 + IAI46_03290 0.82 -0.0
711,233 + IAI46_03290 0.82 +1.0
711,234 - IAI46_03290 0.83 +0.0
711,234 - IAI46_03290 0.83 +0.2
711,237 + IAI46_03290 0.84 +1.2
711,238 - IAI46_03290 0.84 +0.2
711,238 - IAI46_03290 0.84 -0.5
711,289 + +1.2
711,351 - -0.4
711,353 + +0.2
711,476 + IAI46_03295 0.11 +0.2
711,524 - IAI46_03295 0.14 -0.7
711,524 - IAI46_03295 0.14 -0.1
711,890 + IAI46_03295 0.36 -0.7
711,933 - IAI46_03295 0.38 +0.2
711,987 + IAI46_03295 0.41 -0.4
711,988 - IAI46_03295 0.41 -0.1
711,996 + IAI46_03295 0.42 -0.8
711,997 - IAI46_03295 0.42 +0.1
712,030 - IAI46_03295 0.44 +0.2
712,030 - IAI46_03295 0.44 +0.4
712,030 - IAI46_03295 0.44 -0.4
712,143 + IAI46_03295 0.50 +0.4
712,144 - IAI46_03295 0.51 +0.2
712,300 + IAI46_03295 0.60 -0.2
712,333 + IAI46_03295 0.62 -0.0
712,563 + IAI46_03295 0.75 -0.2
712,564 - IAI46_03295 0.75 -0.1
712,600 + IAI46_03295 0.77 +0.3
712,600 + IAI46_03295 0.77 +0.3
712,600 + IAI46_03295 0.77 -0.6
712,601 - IAI46_03295 0.77 -0.1
712,601 - IAI46_03295 0.77 -1.0
712,601 - IAI46_03295 0.77 +1.4
712,601 - IAI46_03295 0.77 +1.5
712,677 - IAI46_03295 0.82 -1.2
712,743 - IAI46_03295 0.86 +0.2
712,743 - IAI46_03295 0.86 -0.9
712,787 + IAI46_03295 0.88 +1.6
712,788 - IAI46_03295 0.88 -0.0
712,818 + +0.3
712,818 + -0.4
712,819 - -0.5
712,819 - -0.5
712,829 + -0.8
712,829 + +0.7
712,953 - -0.3
713,160 + IAI46_03300 0.67 -0.5
713,160 + IAI46_03300 0.67 -2.0
713,160 + IAI46_03300 0.67 +1.3
713,161 - IAI46_03300 0.68 -0.1
713,161 - IAI46_03300 0.68 +0.2
713,161 - IAI46_03300 0.68 -0.0
713,161 - IAI46_03300 0.68 -0.0
713,161 - IAI46_03300 0.68 +0.1
713,161 - IAI46_03300 0.68 -0.4
713,163 + IAI46_03300 0.70 -0.5
713,202 + -0.0
713,202 + +0.2
713,202 + +0.2
713,203 - +0.0
713,203 - -0.0
713,203 - -0.0
713,203 - -0.8
713,203 - +0.0
713,278 + +0.2
713,279 - -0.7
713,453 - IAI46_03305 0.22 +0.2
713,509 + IAI46_03305 0.30 +0.5
713,938 - +0.2
713,969 + +0.8
713,970 - +0.6
713,975 + +0.1
713,975 + -0.7
713,976 - -0.3

Or see this region's nucleotide sequence