Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03285 and IAI46_03290 are separated by 147 nucleotides IAI46_03290 and IAI46_03295 are separated by 3 nucleotides
IAI46_03285: IAI46_03285 - DedA family protein, at 710,076 to 710,843
_03285
IAI46_03290: IAI46_03290 - acetolactate synthase small subunit, at 710,991 to 711,284
_03290
IAI46_03295: IAI46_03295 - acetolactate synthase large subunit, at 711,288 to 712,982
_03295
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1 at 710.075 kb on - strand at 710.085 kb on + strand at 710.085 kb on + strand at 710.086 kb on - strand at 710.086 kb on - strand at 710.089 kb on + strand at 710.237 kb on - strand, within IAI46_03285 at 710.244 kb on + strand, within IAI46_03285 at 710.244 kb on + strand, within IAI46_03285 at 710.247 kb on + strand, within IAI46_03285 at 710.299 kb on - strand, within IAI46_03285 at 710.402 kb on + strand, within IAI46_03285 at 710.490 kb on - strand, within IAI46_03285 at 710.490 kb on - strand, within IAI46_03285 at 710.519 kb on + strand, within IAI46_03285 at 710.539 kb on - strand, within IAI46_03285 at 710.539 kb on - strand, within IAI46_03285 at 710.606 kb on + strand, within IAI46_03285 at 710.606 kb on + strand, within IAI46_03285 at 710.633 kb on - strand, within IAI46_03285 at 710.633 kb on - strand, within IAI46_03285 at 710.778 kb on + strand at 710.778 kb on + strand at 710.779 kb on - strand at 710.808 kb on + strand at 710.899 kb on + strand at 710.899 kb on + strand at 710.899 kb on + strand at 710.899 kb on + strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.900 kb on - strand at 710.903 kb on + strand at 710.903 kb on + strand at 710.904 kb on - strand at 710.904 kb on - strand at 710.907 kb on + strand at 710.907 kb on + strand at 710.907 kb on + strand at 710.907 kb on + strand at 710.908 kb on - strand at 710.908 kb on - strand at 710.908 kb on - strand at 710.911 kb on + strand at 710.962 kb on + strand at 710.969 kb on + strand at 710.992 kb on + strand at 710.992 kb on + strand at 710.993 kb on - strand at 711.048 kb on + strand, within IAI46_03290 at 711.118 kb on - strand, within IAI46_03290 at 711.118 kb on - strand, within IAI46_03290 at 711.118 kb on - strand, within IAI46_03290 at 711.233 kb on + strand, within IAI46_03290 at 711.233 kb on + strand, within IAI46_03290 at 711.233 kb on + strand, within IAI46_03290 at 711.233 kb on + strand, within IAI46_03290 at 711.233 kb on + strand, within IAI46_03290 at 711.234 kb on - strand, within IAI46_03290 at 711.234 kb on - strand, within IAI46_03290 at 711.237 kb on + strand, within IAI46_03290 at 711.238 kb on - strand, within IAI46_03290 at 711.238 kb on - strand, within IAI46_03290 at 711.289 kb on + strand at 711.351 kb on - strand at 711.353 kb on + strand at 711.476 kb on + strand, within IAI46_03295 at 711.524 kb on - strand, within IAI46_03295 at 711.524 kb on - strand, within IAI46_03295 at 711.890 kb on + strand, within IAI46_03295 at 711.933 kb on - strand, within IAI46_03295 at 711.987 kb on + strand, within IAI46_03295 at 711.988 kb on - strand, within IAI46_03295 at 711.996 kb on + strand, within IAI46_03295 at 711.997 kb on - strand, within IAI46_03295 at 712.030 kb on - strand, within IAI46_03295 at 712.030 kb on - strand, within IAI46_03295 at 712.030 kb on - strand, within IAI46_03295 at 712.143 kb on + strand, within IAI46_03295 at 712.144 kb on - strand, within IAI46_03295
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 710,075 - +0.3 710,085 + +0.0 710,085 + +0.1 710,086 - +0.1 710,086 - +0.6 710,089 + +0.8 710,237 - IAI46_03285 0.21 +0.3 710,244 + IAI46_03285 0.22 -0.2 710,244 + IAI46_03285 0.22 +0.7 710,247 + IAI46_03285 0.22 +0.5 710,299 - IAI46_03285 0.29 +0.2 710,402 + IAI46_03285 0.42 +1.7 710,490 - IAI46_03285 0.54 +0.7 710,490 - IAI46_03285 0.54 +0.6 710,519 + IAI46_03285 0.58 -1.9 710,539 - IAI46_03285 0.60 -0.2 710,539 - IAI46_03285 0.60 +1.2 710,606 + IAI46_03285 0.69 -0.3 710,606 + IAI46_03285 0.69 -0.4 710,633 - IAI46_03285 0.73 +0.5 710,633 - IAI46_03285 0.73 -0.6 710,778 + +0.8 710,778 + -0.5 710,779 - -0.7 710,808 + +0.1 710,899 + -0.4 710,899 + +0.2 710,899 + +0.2 710,899 + +0.2 710,900 - -0.2 710,900 - +0.2 710,900 - +0.0 710,900 - +0.7 710,900 - -0.4 710,900 - -0.1 710,900 - +1.1 710,900 - +0.6 710,903 + +1.3 710,903 + -0.4 710,904 - -0.6 710,904 - -0.0 710,907 + +0.4 710,907 + -0.5 710,907 + +0.1 710,907 + +0.1 710,908 - -0.2 710,908 - -0.0 710,908 - -0.6 710,911 + -0.3 710,962 + +0.0 710,969 + +0.1 710,992 + -0.4 710,992 + -0.6 710,993 - +0.6 711,048 + IAI46_03290 0.19 -0.2 711,118 - IAI46_03290 0.43 +0.3 711,118 - IAI46_03290 0.43 -0.3 711,118 - IAI46_03290 0.43 +0.2 711,233 + IAI46_03290 0.82 +0.6 711,233 + IAI46_03290 0.82 +0.2 711,233 + IAI46_03290 0.82 +0.6 711,233 + IAI46_03290 0.82 -0.0 711,233 + IAI46_03290 0.82 +1.0 711,234 - IAI46_03290 0.83 +0.0 711,234 - IAI46_03290 0.83 +0.2 711,237 + IAI46_03290 0.84 +1.2 711,238 - IAI46_03290 0.84 +0.2 711,238 - IAI46_03290 0.84 -0.5 711,289 + +1.2 711,351 - -0.4 711,353 + +0.2 711,476 + IAI46_03295 0.11 +0.2 711,524 - IAI46_03295 0.14 -0.7 711,524 - IAI46_03295 0.14 -0.1 711,890 + IAI46_03295 0.36 -0.7 711,933 - IAI46_03295 0.38 +0.2 711,987 + IAI46_03295 0.41 -0.4 711,988 - IAI46_03295 0.41 -0.1 711,996 + IAI46_03295 0.42 -0.8 711,997 - IAI46_03295 0.42 +0.1 712,030 - IAI46_03295 0.44 +0.2 712,030 - IAI46_03295 0.44 +0.4 712,030 - IAI46_03295 0.44 -0.4 712,143 + IAI46_03295 0.50 +0.4 712,144 - IAI46_03295 0.51 +0.2
Or see this region's nucleotide sequence