Strain Fitness in Serratia liquefaciens MT49 around IAI46_03200

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03195 and IAI46_03200 are separated by 184 nucleotidesIAI46_03200 and IAI46_03205 overlap by 8 nucleotides IAI46_03195: IAI46_03195 - carbamoyl-phosphate synthase large subunit, at 685,030 to 688,254 _03195 IAI46_03200: IAI46_03200 - glutathione-regulated potassium-efflux system oxidoreductase KefF, at 688,439 to 688,996 _03200 IAI46_03205: IAI46_03205 - glutathione-regulated potassium-efflux system protein KefC, at 688,989 to 690,842 _03205 Position (kb) 688 689Strain fitness (log2 ratio) -2 -1 0 1 2at 687.688 kb on + strand, within IAI46_03195at 687.689 kb on - strand, within IAI46_03195at 687.691 kb on + strand, within IAI46_03195at 687.692 kb on - strand, within IAI46_03195at 687.900 kb on - strand, within IAI46_03195at 687.902 kb on + strand, within IAI46_03195at 687.902 kb on + strand, within IAI46_03195at 687.988 kb on - strandat 688.057 kb on + strandat 688.057 kb on + strandat 688.057 kb on + strandat 688.063 kb on + strandat 688.063 kb on + strandat 688.063 kb on + strandat 688.063 kb on + strandat 688.063 kb on + strandat 688.064 kb on - strandat 688.064 kb on - strandat 688.064 kb on - strandat 688.123 kb on - strandat 688.135 kb on + strandat 688.147 kb on + strandat 688.148 kb on - strandat 688.242 kb on + strandat 688.243 kb on - strandat 688.243 kb on - strandat 688.252 kb on + strandat 688.253 kb on - strandat 688.394 kb on + strandat 688.395 kb on - strandat 688.395 kb on - strandat 688.396 kb on + strandat 688.396 kb on + strandat 688.396 kb on + strandat 688.396 kb on + strandat 688.396 kb on + strandat 688.397 kb on - strandat 688.397 kb on - strandat 688.397 kb on - strandat 688.397 kb on - strandat 688.397 kb on - strandat 688.407 kb on + strandat 688.407 kb on + strandat 688.408 kb on - strandat 688.408 kb on - strandat 688.408 kb on - strandat 688.450 kb on + strandat 688.451 kb on - strandat 688.517 kb on - strand, within IAI46_03200at 688.534 kb on - strand, within IAI46_03200at 688.544 kb on + strand, within IAI46_03200at 688.544 kb on + strand, within IAI46_03200at 688.544 kb on + strand, within IAI46_03200at 688.545 kb on - strand, within IAI46_03200at 688.614 kb on + strand, within IAI46_03200at 688.640 kb on + strand, within IAI46_03200at 688.700 kb on + strand, within IAI46_03200at 688.700 kb on + strand, within IAI46_03200at 688.700 kb on + strand, within IAI46_03200at 688.701 kb on - strand, within IAI46_03200at 688.701 kb on - strand, within IAI46_03200at 688.839 kb on - strand, within IAI46_03200at 688.847 kb on - strand, within IAI46_03200at 688.862 kb on + strand, within IAI46_03200at 688.862 kb on + strand, within IAI46_03200at 688.863 kb on - strand, within IAI46_03200at 688.863 kb on - strand, within IAI46_03200at 688.863 kb on - strand, within IAI46_03200at 688.876 kb on + strand, within IAI46_03200at 688.876 kb on + strand, within IAI46_03200at 688.877 kb on - strand, within IAI46_03200at 688.885 kb on + strand, within IAI46_03200at 688.926 kb on - strand, within IAI46_03200at 688.941 kb on + strandat 688.947 kb on - strandat 688.994 kb on + strandat 689.025 kb on + strandat 689.025 kb on + strandat 689.025 kb on + strandat 689.026 kb on - strandat 689.195 kb on + strand, within IAI46_03205at 689.195 kb on + strand, within IAI46_03205at 689.195 kb on + strand, within IAI46_03205at 689.249 kb on - strand, within IAI46_03205at 689.519 kb on + strand, within IAI46_03205at 689.519 kb on + strand, within IAI46_03205at 689.520 kb on - strand, within IAI46_03205at 689.520 kb on - strand, within IAI46_03205at 689.520 kb on - strand, within IAI46_03205at 689.520 kb on - strand, within IAI46_03205at 689.573 kb on - strand, within IAI46_03205at 689.578 kb on + strand, within IAI46_03205at 689.592 kb on + strand, within IAI46_03205at 689.593 kb on - strand, within IAI46_03205at 689.593 kb on - strand, within IAI46_03205at 689.593 kb on - strand, within IAI46_03205at 689.761 kb on - strand, within IAI46_03205at 689.784 kb on - strand, within IAI46_03205at 689.900 kb on + strand, within IAI46_03205at 689.901 kb on - strand, within IAI46_03205

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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687,688 + IAI46_03195 0.82 -1.6
687,689 - IAI46_03195 0.82 +0.2
687,691 + IAI46_03195 0.83 -0.2
687,692 - IAI46_03195 0.83 -0.4
687,900 - IAI46_03195 0.89 -1.7
687,902 + IAI46_03195 0.89 -0.2
687,902 + IAI46_03195 0.89 -0.2
687,988 - -0.6
688,057 + +1.4
688,057 + -1.0
688,057 + +0.1
688,063 + -0.0
688,063 + -0.4
688,063 + -0.0
688,063 + -2.7
688,063 + -0.8
688,064 - +0.2
688,064 - -0.1
688,064 - -0.4
688,123 - -0.5
688,135 + -0.4
688,147 + -0.5
688,148 - -0.7
688,242 + +1.0
688,243 - -0.7
688,243 - -0.1
688,252 + +0.9
688,253 - -1.8
688,394 + +0.4
688,395 - +0.8
688,395 - +0.9
688,396 + -0.8
688,396 + -0.5
688,396 + +1.0
688,396 + +0.6
688,396 + -0.2
688,397 - -1.3
688,397 - +0.6
688,397 - -0.4
688,397 - +1.5
688,397 - +0.4
688,407 + +0.2
688,407 + +1.3
688,408 - -0.6
688,408 - +2.0
688,408 - +1.1
688,450 + -0.1
688,451 - -0.0
688,517 - IAI46_03200 0.14 -0.4
688,534 - IAI46_03200 0.17 -0.1
688,544 + IAI46_03200 0.19 -1.0
688,544 + IAI46_03200 0.19 +0.3
688,544 + IAI46_03200 0.19 +1.0
688,545 - IAI46_03200 0.19 +0.9
688,614 + IAI46_03200 0.31 -0.1
688,640 + IAI46_03200 0.36 -0.1
688,700 + IAI46_03200 0.47 -0.3
688,700 + IAI46_03200 0.47 +0.4
688,700 + IAI46_03200 0.47 +0.2
688,701 - IAI46_03200 0.47 -0.0
688,701 - IAI46_03200 0.47 +1.3
688,839 - IAI46_03200 0.72 +0.1
688,847 - IAI46_03200 0.73 -0.0
688,862 + IAI46_03200 0.76 -0.1
688,862 + IAI46_03200 0.76 +0.2
688,863 - IAI46_03200 0.76 +0.8
688,863 - IAI46_03200 0.76 -0.7
688,863 - IAI46_03200 0.76 +0.0
688,876 + IAI46_03200 0.78 +0.7
688,876 + IAI46_03200 0.78 +0.0
688,877 - IAI46_03200 0.78 -0.4
688,885 + IAI46_03200 0.80 -0.3
688,926 - IAI46_03200 0.87 +0.5
688,941 + +0.5
688,947 - -1.2
688,994 + -0.8
689,025 + +0.7
689,025 + +0.7
689,025 + -0.8
689,026 - -0.6
689,195 + IAI46_03205 0.11 +0.5
689,195 + IAI46_03205 0.11 +0.0
689,195 + IAI46_03205 0.11 -0.1
689,249 - IAI46_03205 0.14 +0.6
689,519 + IAI46_03205 0.29 +2.0
689,519 + IAI46_03205 0.29 +1.4
689,520 - IAI46_03205 0.29 -0.8
689,520 - IAI46_03205 0.29 -0.8
689,520 - IAI46_03205 0.29 -0.1
689,520 - IAI46_03205 0.29 -0.3
689,573 - IAI46_03205 0.31 +0.5
689,578 + IAI46_03205 0.32 -0.3
689,592 + IAI46_03205 0.33 -1.2
689,593 - IAI46_03205 0.33 -0.3
689,593 - IAI46_03205 0.33 -0.3
689,593 - IAI46_03205 0.33 +0.6
689,761 - IAI46_03205 0.42 -0.2
689,784 - IAI46_03205 0.43 +0.9
689,900 + IAI46_03205 0.49 +0.2
689,901 - IAI46_03205 0.49 +0.8

Or see this region's nucleotide sequence