Strain Fitness in Serratia liquefaciens MT49 around IAI46_03155

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03145 and IAI46_03150 are separated by 40 nucleotidesIAI46_03150 and IAI46_03155 overlap by 1 nucleotidesIAI46_03155 and IAI46_03160 are separated by 2 nucleotides IAI46_03145: IAI46_03145 - SDR family oxidoreductase, at 673,385 to 674,164 _03145 IAI46_03150: IAI46_03150 - dihydrodipicolinate synthase family protein, at 674,205 to 675,107 _03150 IAI46_03155: IAI46_03155 - dihydroxy-acid dehydratase, at 675,107 to 676,819 _03155 IAI46_03160: IAI46_03160 - MFS transporter, at 676,822 to 678,222 _03160 Position (kb) 675 676 677Strain fitness (log2 ratio) -1 0 1at 674.109 kb on - strandat 674.159 kb on + strandat 674.159 kb on + strandat 674.159 kb on + strandat 674.160 kb on - strandat 674.160 kb on - strandat 674.160 kb on - strandat 674.160 kb on - strandat 674.164 kb on + strandat 674.164 kb on + strandat 674.164 kb on + strandat 674.164 kb on + strandat 674.164 kb on + strandat 674.165 kb on - strandat 674.165 kb on - strandat 674.165 kb on - strandat 674.165 kb on - strandat 674.166 kb on + strandat 674.166 kb on + strandat 674.166 kb on + strandat 674.166 kb on + strandat 674.167 kb on - strandat 674.167 kb on - strandat 674.167 kb on - strandat 674.167 kb on - strandat 674.241 kb on - strandat 674.301 kb on - strand, within IAI46_03150at 674.341 kb on + strand, within IAI46_03150at 674.341 kb on + strand, within IAI46_03150at 674.371 kb on + strand, within IAI46_03150at 674.371 kb on + strand, within IAI46_03150at 674.372 kb on - strand, within IAI46_03150at 674.372 kb on - strand, within IAI46_03150at 674.372 kb on - strand, within IAI46_03150at 674.396 kb on + strand, within IAI46_03150at 674.434 kb on + strand, within IAI46_03150at 674.435 kb on - strand, within IAI46_03150at 674.438 kb on + strand, within IAI46_03150at 674.439 kb on - strand, within IAI46_03150at 674.446 kb on + strand, within IAI46_03150at 674.446 kb on + strand, within IAI46_03150at 674.447 kb on - strand, within IAI46_03150at 674.510 kb on + strand, within IAI46_03150at 674.511 kb on - strand, within IAI46_03150at 674.511 kb on - strand, within IAI46_03150at 674.511 kb on - strand, within IAI46_03150at 674.511 kb on - strand, within IAI46_03150at 674.511 kb on - strand, within IAI46_03150at 674.512 kb on + strand, within IAI46_03150at 674.512 kb on + strand, within IAI46_03150at 674.512 kb on + strand, within IAI46_03150at 674.512 kb on + strand, within IAI46_03150at 674.513 kb on - strand, within IAI46_03150at 674.513 kb on - strand, within IAI46_03150at 674.575 kb on + strand, within IAI46_03150at 674.683 kb on + strand, within IAI46_03150at 674.684 kb on - strand, within IAI46_03150at 674.809 kb on + strand, within IAI46_03150at 674.897 kb on + strand, within IAI46_03150at 674.898 kb on - strand, within IAI46_03150at 674.901 kb on + strand, within IAI46_03150at 674.902 kb on - strand, within IAI46_03150at 674.902 kb on - strand, within IAI46_03150at 675.066 kb on - strandat 675.089 kb on + strandat 675.090 kb on - strandat 675.109 kb on - strandat 675.131 kb on + strandat 675.131 kb on + strandat 675.153 kb on - strandat 675.169 kb on - strandat 675.170 kb on + strandat 675.171 kb on - strandat 675.259 kb on + strandat 675.260 kb on - strandat 675.266 kb on - strandat 675.287 kb on + strand, within IAI46_03155at 675.346 kb on + strand, within IAI46_03155at 675.450 kb on + strand, within IAI46_03155at 675.478 kb on + strand, within IAI46_03155at 675.479 kb on - strand, within IAI46_03155at 675.517 kb on + strand, within IAI46_03155at 675.518 kb on - strand, within IAI46_03155at 675.532 kb on + strand, within IAI46_03155at 675.532 kb on + strand, within IAI46_03155at 675.532 kb on + strand, within IAI46_03155at 675.533 kb on - strand, within IAI46_03155at 675.533 kb on - strand, within IAI46_03155at 675.533 kb on - strand, within IAI46_03155at 675.646 kb on + strand, within IAI46_03155at 675.646 kb on + strand, within IAI46_03155at 675.647 kb on - strand, within IAI46_03155at 675.697 kb on + strand, within IAI46_03155at 675.810 kb on - strand, within IAI46_03155at 675.887 kb on + strand, within IAI46_03155at 675.946 kb on - strand, within IAI46_03155at 676.002 kb on + strand, within IAI46_03155at 676.002 kb on + strand, within IAI46_03155at 676.002 kb on + strand, within IAI46_03155at 676.003 kb on - strand, within IAI46_03155at 676.003 kb on - strand, within IAI46_03155at 676.037 kb on - strand, within IAI46_03155at 676.065 kb on - strand, within IAI46_03155at 676.156 kb on + strand, within IAI46_03155at 676.157 kb on - strand, within IAI46_03155at 676.164 kb on - strand, within IAI46_03155at 676.200 kb on + strand, within IAI46_03155at 676.200 kb on + strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.204 kb on + strand, within IAI46_03155at 676.204 kb on + strand, within IAI46_03155at 676.204 kb on + strand, within IAI46_03155at 676.205 kb on - strand, within IAI46_03155at 676.205 kb on - strand, within IAI46_03155at 676.325 kb on - strand, within IAI46_03155at 676.325 kb on - strand, within IAI46_03155at 676.330 kb on + strand, within IAI46_03155at 676.331 kb on - strand, within IAI46_03155at 676.331 kb on - strand, within IAI46_03155at 676.332 kb on + strand, within IAI46_03155at 676.379 kb on - strand, within IAI46_03155at 676.379 kb on - strand, within IAI46_03155at 676.516 kb on - strand, within IAI46_03155at 676.516 kb on - strand, within IAI46_03155at 676.562 kb on - strand, within IAI46_03155at 676.610 kb on + strand, within IAI46_03155at 676.610 kb on + strand, within IAI46_03155at 676.610 kb on + strand, within IAI46_03155at 676.611 kb on - strand, within IAI46_03155at 676.660 kb on + strandat 676.660 kb on + strandat 676.661 kb on - strandat 676.661 kb on - strandat 676.661 kb on - strandat 676.661 kb on - strandat 676.662 kb on + strandat 676.662 kb on + strandat 676.663 kb on - strandat 676.663 kb on - strandat 676.663 kb on - strandat 676.726 kb on - strandat 676.823 kb on + strandat 676.840 kb on - strandat 676.844 kb on - strandat 677.123 kb on + strand, within IAI46_03160at 677.123 kb on + strand, within IAI46_03160at 677.123 kb on + strand, within IAI46_03160at 677.123 kb on + strand, within IAI46_03160at 677.124 kb on - strand, within IAI46_03160at 677.124 kb on - strand, within IAI46_03160at 677.128 kb on - strand, within IAI46_03160at 677.201 kb on + strand, within IAI46_03160at 677.202 kb on - strand, within IAI46_03160at 677.224 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.297 kb on - strand, within IAI46_03160at 677.297 kb on - strand, within IAI46_03160at 677.301 kb on + strand, within IAI46_03160at 677.301 kb on + strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.321 kb on + strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.327 kb on - strand, within IAI46_03160at 677.408 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.614 kb on + strand, within IAI46_03160at 677.614 kb on + strand, within IAI46_03160at 677.630 kb on - strand, within IAI46_03160at 677.678 kb on - strand, within IAI46_03160at 677.678 kb on - strand, within IAI46_03160at 677.751 kb on + strand, within IAI46_03160at 677.752 kb on - strand, within IAI46_03160at 677.810 kb on - strand, within IAI46_03160at 677.813 kb on + strand, within IAI46_03160at 677.813 kb on + strand, within IAI46_03160at 677.814 kb on - strand, within IAI46_03160at 677.814 kb on - strand, within IAI46_03160

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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674,109 - +0.7
674,159 + +0.3
674,159 + +0.1
674,159 + +0.7
674,160 - -0.1
674,160 - -0.3
674,160 - -0.5
674,160 - +1.2
674,164 + +0.6
674,164 + -0.8
674,164 + +0.1
674,164 + +0.4
674,164 + +0.2
674,165 - +0.2
674,165 - +0.3
674,165 - -1.3
674,165 - -0.5
674,166 + -0.3
674,166 + +0.8
674,166 + -0.5
674,166 + -0.7
674,167 - -0.5
674,167 - +0.7
674,167 - -0.6
674,167 - +0.4
674,241 - +0.3
674,301 - IAI46_03150 0.11 +0.4
674,341 + IAI46_03150 0.15 -1.5
674,341 + IAI46_03150 0.15 -0.4
674,371 + IAI46_03150 0.18 -0.4
674,371 + IAI46_03150 0.18 -0.5
674,372 - IAI46_03150 0.18 +0.4
674,372 - IAI46_03150 0.18 +1.6
674,372 - IAI46_03150 0.18 -0.3
674,396 + IAI46_03150 0.21 -0.2
674,434 + IAI46_03150 0.25 +0.1
674,435 - IAI46_03150 0.25 +0.1
674,438 + IAI46_03150 0.26 -1.6
674,439 - IAI46_03150 0.26 -0.6
674,446 + IAI46_03150 0.27 -0.7
674,446 + IAI46_03150 0.27 +0.1
674,447 - IAI46_03150 0.27 -0.1
674,510 + IAI46_03150 0.34 +0.2
674,511 - IAI46_03150 0.34 -0.7
674,511 - IAI46_03150 0.34 +0.9
674,511 - IAI46_03150 0.34 -0.1
674,511 - IAI46_03150 0.34 +0.0
674,511 - IAI46_03150 0.34 -0.5
674,512 + IAI46_03150 0.34 -0.1
674,512 + IAI46_03150 0.34 +0.4
674,512 + IAI46_03150 0.34 +0.6
674,512 + IAI46_03150 0.34 +0.5
674,513 - IAI46_03150 0.34 +1.3
674,513 - IAI46_03150 0.34 -0.6
674,575 + IAI46_03150 0.41 +0.2
674,683 + IAI46_03150 0.53 +0.6
674,684 - IAI46_03150 0.53 -1.2
674,809 + IAI46_03150 0.67 -0.0
674,897 + IAI46_03150 0.77 +0.1
674,898 - IAI46_03150 0.77 +0.4
674,901 + IAI46_03150 0.77 +0.5
674,902 - IAI46_03150 0.77 +0.0
674,902 - IAI46_03150 0.77 -0.1
675,066 - -0.9
675,089 + -0.0
675,090 - -0.3
675,109 - -0.4
675,131 + -0.2
675,131 + +0.6
675,153 - -0.2
675,169 - -0.1
675,170 + +0.1
675,171 - +0.4
675,259 + -1.5
675,260 - +0.2
675,266 - -0.9
675,287 + IAI46_03155 0.11 +0.2
675,346 + IAI46_03155 0.14 +0.7
675,450 + IAI46_03155 0.20 -1.0
675,478 + IAI46_03155 0.22 +0.4
675,479 - IAI46_03155 0.22 -0.0
675,517 + IAI46_03155 0.24 -0.2
675,518 - IAI46_03155 0.24 -0.5
675,532 + IAI46_03155 0.25 -0.0
675,532 + IAI46_03155 0.25 +0.6
675,532 + IAI46_03155 0.25 +1.3
675,533 - IAI46_03155 0.25 +0.7
675,533 - IAI46_03155 0.25 +0.9
675,533 - IAI46_03155 0.25 -0.6
675,646 + IAI46_03155 0.31 +0.2
675,646 + IAI46_03155 0.31 +0.5
675,647 - IAI46_03155 0.32 +0.8
675,697 + IAI46_03155 0.34 +0.0
675,810 - IAI46_03155 0.41 +0.9
675,887 + IAI46_03155 0.46 -0.5
675,946 - IAI46_03155 0.49 -0.1
676,002 + IAI46_03155 0.52 +0.5
676,002 + IAI46_03155 0.52 +0.7
676,002 + IAI46_03155 0.52 +0.4
676,003 - IAI46_03155 0.52 -0.6
676,003 - IAI46_03155 0.52 +0.4
676,037 - IAI46_03155 0.54 +0.2
676,065 - IAI46_03155 0.56 -0.8
676,156 + IAI46_03155 0.61 -0.4
676,157 - IAI46_03155 0.61 +0.4
676,164 - IAI46_03155 0.62 -0.8
676,200 + IAI46_03155 0.64 -0.6
676,200 + IAI46_03155 0.64 +0.5
676,201 - IAI46_03155 0.64 -0.3
676,201 - IAI46_03155 0.64 +1.0
676,201 - IAI46_03155 0.64 -0.5
676,201 - IAI46_03155 0.64 +0.5
676,204 + IAI46_03155 0.64 -0.4
676,204 + IAI46_03155 0.64 +0.1
676,204 + IAI46_03155 0.64 +0.5
676,205 - IAI46_03155 0.64 -0.3
676,205 - IAI46_03155 0.64 +1.3
676,325 - IAI46_03155 0.71 +0.6
676,325 - IAI46_03155 0.71 -0.7
676,330 + IAI46_03155 0.71 -0.5
676,331 - IAI46_03155 0.71 +0.3
676,331 - IAI46_03155 0.71 +0.3
676,332 + IAI46_03155 0.72 -0.8
676,379 - IAI46_03155 0.74 -0.1
676,379 - IAI46_03155 0.74 -0.6
676,516 - IAI46_03155 0.82 +0.3
676,516 - IAI46_03155 0.82 +0.5
676,562 - IAI46_03155 0.85 -0.1
676,610 + IAI46_03155 0.88 +0.4
676,610 + IAI46_03155 0.88 -0.2
676,610 + IAI46_03155 0.88 -0.6
676,611 - IAI46_03155 0.88 -0.0
676,660 + +0.5
676,660 + +0.3
676,661 - -0.1
676,661 - -0.1
676,661 - +0.2
676,661 - -0.0
676,662 + +0.7
676,662 + -0.8
676,663 - -0.7
676,663 - -0.3
676,663 - -0.0
676,726 - +0.0
676,823 + -0.9
676,840 - +0.0
676,844 - +0.2
677,123 + IAI46_03160 0.21 -0.4
677,123 + IAI46_03160 0.21 +0.1
677,123 + IAI46_03160 0.21 -0.4
677,123 + IAI46_03160 0.21 -0.1
677,124 - IAI46_03160 0.22 +0.1
677,124 - IAI46_03160 0.22 +0.6
677,128 - IAI46_03160 0.22 -0.3
677,201 + IAI46_03160 0.27 +0.3
677,202 - IAI46_03160 0.27 -0.8
677,224 - IAI46_03160 0.29 -0.3
677,251 - IAI46_03160 0.31 +0.4
677,251 - IAI46_03160 0.31 +0.0
677,251 - IAI46_03160 0.31 -0.3
677,251 - IAI46_03160 0.31 -0.2
677,251 - IAI46_03160 0.31 +0.5
677,297 - IAI46_03160 0.34 +0.5
677,297 - IAI46_03160 0.34 -0.4
677,301 + IAI46_03160 0.34 -0.1
677,301 + IAI46_03160 0.34 -0.1
677,302 - IAI46_03160 0.34 -0.5
677,302 - IAI46_03160 0.34 -0.5
677,302 - IAI46_03160 0.34 -0.4
677,302 - IAI46_03160 0.34 -1.2
677,302 - IAI46_03160 0.34 -0.9
677,321 + IAI46_03160 0.36 -0.3
677,322 - IAI46_03160 0.36 -0.3
677,322 - IAI46_03160 0.36 +0.2
677,322 - IAI46_03160 0.36 +0.5
677,322 - IAI46_03160 0.36 +0.1
677,327 - IAI46_03160 0.36 -0.3
677,408 + IAI46_03160 0.42 -0.1
677,456 + IAI46_03160 0.45 +0.4
677,456 + IAI46_03160 0.45 -1.2
677,456 + IAI46_03160 0.45 -0.8
677,614 + IAI46_03160 0.57 -0.2
677,614 + IAI46_03160 0.57 -0.2
677,630 - IAI46_03160 0.58 -0.4
677,678 - IAI46_03160 0.61 +0.6
677,678 - IAI46_03160 0.61 +0.4
677,751 + IAI46_03160 0.66 +0.6
677,752 - IAI46_03160 0.66 +0.5
677,810 - IAI46_03160 0.71 -0.4
677,813 + IAI46_03160 0.71 +0.5
677,813 + IAI46_03160 0.71 -0.2
677,814 - IAI46_03160 0.71 +0.6
677,814 - IAI46_03160 0.71 -0.8

Or see this region's nucleotide sequence