Strain Fitness in Serratia liquefaciens MT49 around IAI46_02920

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02915 and IAI46_02920 are separated by 69 nucleotidesIAI46_02920 and IAI46_02925 are separated by 111 nucleotidesIAI46_02925 and IAI46_02930 are separated by 62 nucleotides IAI46_02915: IAI46_02915 - thymidine phosphorylase, at 621,854 to 623,176 _02915 IAI46_02920: IAI46_02920 - phosphopentomutase, at 623,246 to 624,469 _02920 IAI46_02925: IAI46_02925 - purine-nucleoside phosphorylase, at 624,581 to 625,312 _02925 IAI46_02930: IAI46_02930 - transcriptional regulator, at 625,375 to 625,590 _02930 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2at 622.252 kb on + strand, within IAI46_02915at 622.253 kb on - strand, within IAI46_02915at 622.253 kb on - strand, within IAI46_02915at 622.255 kb on + strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.256 kb on - strand, within IAI46_02915at 622.355 kb on + strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.356 kb on - strand, within IAI46_02915at 622.370 kb on - strand, within IAI46_02915at 622.378 kb on + strand, within IAI46_02915at 622.379 kb on - strand, within IAI46_02915at 622.411 kb on + strand, within IAI46_02915at 622.411 kb on + strand, within IAI46_02915at 622.412 kb on - strand, within IAI46_02915at 622.484 kb on - strand, within IAI46_02915at 622.484 kb on - strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.493 kb on + strand, within IAI46_02915at 622.534 kb on - strand, within IAI46_02915at 622.671 kb on + strand, within IAI46_02915at 622.671 kb on + strand, within IAI46_02915at 622.775 kb on - strand, within IAI46_02915at 622.798 kb on + strand, within IAI46_02915at 622.799 kb on - strand, within IAI46_02915at 622.850 kb on + strand, within IAI46_02915at 622.850 kb on + strand, within IAI46_02915at 622.883 kb on + strand, within IAI46_02915at 622.884 kb on - strand, within IAI46_02915at 622.988 kb on + strand, within IAI46_02915at 622.988 kb on + strand, within IAI46_02915at 622.989 kb on - strand, within IAI46_02915at 623.151 kb on + strandat 623.151 kb on + strandat 623.151 kb on + strandat 623.152 kb on - strandat 623.156 kb on + strandat 623.157 kb on - strandat 623.159 kb on - strandat 623.159 kb on - strandat 623.159 kb on - strandat 623.175 kb on - strandat 623.179 kb on - strandat 623.260 kb on + strandat 623.261 kb on - strandat 623.261 kb on - strandat 623.264 kb on - strandat 623.268 kb on + strandat 623.268 kb on + strandat 623.268 kb on + strandat 623.269 kb on - strandat 623.269 kb on - strandat 623.271 kb on + strandat 623.272 kb on - strandat 623.501 kb on + strand, within IAI46_02920at 623.508 kb on - strand, within IAI46_02920at 623.508 kb on - strand, within IAI46_02920at 623.592 kb on - strand, within IAI46_02920at 623.667 kb on - strand, within IAI46_02920at 623.816 kb on + strand, within IAI46_02920at 623.817 kb on - strand, within IAI46_02920at 623.861 kb on + strand, within IAI46_02920at 624.031 kb on + strand, within IAI46_02920at 624.035 kb on + strand, within IAI46_02920at 624.035 kb on + strand, within IAI46_02920at 624.036 kb on - strand, within IAI46_02920at 624.036 kb on - strand, within IAI46_02920at 624.036 kb on - strand, within IAI46_02920at 624.036 kb on - strand, within IAI46_02920at 624.170 kb on + strand, within IAI46_02920at 624.170 kb on + strand, within IAI46_02920at 624.265 kb on + strand, within IAI46_02920at 624.265 kb on + strand, within IAI46_02920at 624.265 kb on + strand, within IAI46_02920at 624.266 kb on - strand, within IAI46_02920at 624.271 kb on + strand, within IAI46_02920at 624.272 kb on - strand, within IAI46_02920at 624.350 kb on + strandat 624.351 kb on - strandat 624.425 kb on + strandat 624.425 kb on + strandat 624.425 kb on + strandat 624.426 kb on - strandat 624.449 kb on + strandat 624.449 kb on + strandat 624.455 kb on - strandat 624.467 kb on + strandat 624.467 kb on + strandat 624.467 kb on + strandat 624.467 kb on + strandat 624.467 kb on + strandat 624.467 kb on + strandat 624.467 kb on + strandat 624.468 kb on - strandat 624.468 kb on - strandat 624.533 kb on + strandat 624.533 kb on + strandat 624.534 kb on - strandat 624.534 kb on - strandat 624.576 kb on + strandat 624.576 kb on + strandat 624.580 kb on + strandat 624.581 kb on - strandat 624.581 kb on - strandat 624.598 kb on + strandat 624.598 kb on + strandat 624.628 kb on - strandat 624.628 kb on - strandat 624.628 kb on - strandat 624.630 kb on + strandat 624.630 kb on + strandat 624.630 kb on + strandat 624.630 kb on + strandat 624.631 kb on - strandat 624.738 kb on - strand, within IAI46_02925at 624.738 kb on - strand, within IAI46_02925at 624.773 kb on - strand, within IAI46_02925at 624.773 kb on - strand, within IAI46_02925at 624.797 kb on + strand, within IAI46_02925at 624.798 kb on - strand, within IAI46_02925at 624.798 kb on - strand, within IAI46_02925at 624.901 kb on + strand, within IAI46_02925at 624.988 kb on + strand, within IAI46_02925at 624.988 kb on + strand, within IAI46_02925at 624.989 kb on - strand, within IAI46_02925at 625.061 kb on + strand, within IAI46_02925at 625.063 kb on + strand, within IAI46_02925at 625.063 kb on + strand, within IAI46_02925at 625.100 kb on + strand, within IAI46_02925at 625.101 kb on - strand, within IAI46_02925at 625.139 kb on + strand, within IAI46_02925at 625.139 kb on + strand, within IAI46_02925at 625.140 kb on - strand, within IAI46_02925at 625.140 kb on - strand, within IAI46_02925at 625.140 kb on - strand, within IAI46_02925at 625.196 kb on - strand, within IAI46_02925at 625.311 kb on - strandat 625.317 kb on - strandat 625.354 kb on + strandat 625.355 kb on - strandat 625.355 kb on - strandat 625.355 kb on - strandat 625.355 kb on - strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.366 kb on + strandat 625.367 kb on - strandat 625.367 kb on - strandat 625.367 kb on - strandat 625.374 kb on + strandat 625.375 kb on - strandat 625.375 kb on - strandat 625.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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622,252 + IAI46_02915 0.30 +0.0
622,253 - IAI46_02915 0.30 -0.1
622,253 - IAI46_02915 0.30 -0.2
622,255 + IAI46_02915 0.30 -1.2
622,256 - IAI46_02915 0.30 -0.4
622,256 - IAI46_02915 0.30 -0.5
622,256 - IAI46_02915 0.30 +0.5
622,256 - IAI46_02915 0.30 -2.6
622,256 - IAI46_02915 0.30 +1.5
622,256 - IAI46_02915 0.30 +0.3
622,355 + IAI46_02915 0.38 +1.0
622,356 - IAI46_02915 0.38 -0.3
622,356 - IAI46_02915 0.38 -0.9
622,356 - IAI46_02915 0.38 +0.4
622,356 - IAI46_02915 0.38 -0.1
622,370 - IAI46_02915 0.39 -0.1
622,378 + IAI46_02915 0.40 +0.4
622,379 - IAI46_02915 0.40 -0.2
622,411 + IAI46_02915 0.42 +0.5
622,411 + IAI46_02915 0.42 +1.1
622,412 - IAI46_02915 0.42 +0.0
622,484 - IAI46_02915 0.48 +0.1
622,484 - IAI46_02915 0.48 +2.0
622,493 + IAI46_02915 0.48 +1.3
622,493 + IAI46_02915 0.48 +0.1
622,493 + IAI46_02915 0.48 -0.5
622,493 + IAI46_02915 0.48 +0.2
622,493 + IAI46_02915 0.48 -0.2
622,534 - IAI46_02915 0.51 -0.4
622,671 + IAI46_02915 0.62 +1.0
622,671 + IAI46_02915 0.62 +0.7
622,775 - IAI46_02915 0.70 -0.1
622,798 + IAI46_02915 0.71 -0.8
622,799 - IAI46_02915 0.71 -1.0
622,850 + IAI46_02915 0.75 +0.2
622,850 + IAI46_02915 0.75 -1.1
622,883 + IAI46_02915 0.78 -0.2
622,884 - IAI46_02915 0.78 -0.5
622,988 + IAI46_02915 0.86 +0.8
622,988 + IAI46_02915 0.86 -0.4
622,989 - IAI46_02915 0.86 +0.1
623,151 + +0.0
623,151 + -0.0
623,151 + -0.1
623,152 - -1.1
623,156 + +0.4
623,157 - +0.0
623,159 - +1.0
623,159 - +0.9
623,159 - +1.9
623,175 - +0.9
623,179 - -0.2
623,260 + +0.2
623,261 - +0.7
623,261 - -0.2
623,264 - +0.5
623,268 + -0.5
623,268 + -0.7
623,268 + -0.4
623,269 - +0.0
623,269 - +1.8
623,271 + -0.4
623,272 - +0.2
623,501 + IAI46_02920 0.21 -0.4
623,508 - IAI46_02920 0.21 +1.1
623,508 - IAI46_02920 0.21 +0.2
623,592 - IAI46_02920 0.28 -0.1
623,667 - IAI46_02920 0.34 +0.5
623,816 + IAI46_02920 0.47 +0.1
623,817 - IAI46_02920 0.47 +0.4
623,861 + IAI46_02920 0.50 +0.4
624,031 + IAI46_02920 0.64 +0.3
624,035 + IAI46_02920 0.64 +0.6
624,035 + IAI46_02920 0.64 -0.7
624,036 - IAI46_02920 0.65 -0.2
624,036 - IAI46_02920 0.65 -0.2
624,036 - IAI46_02920 0.65 -0.0
624,036 - IAI46_02920 0.65 +0.5
624,170 + IAI46_02920 0.75 +1.0
624,170 + IAI46_02920 0.75 +2.5
624,265 + IAI46_02920 0.83 +0.3
624,265 + IAI46_02920 0.83 +0.5
624,265 + IAI46_02920 0.83 -0.4
624,266 - IAI46_02920 0.83 +0.7
624,271 + IAI46_02920 0.84 +0.7
624,272 - IAI46_02920 0.84 +0.5
624,350 + -0.4
624,351 - +0.2
624,425 + -1.3
624,425 + +1.4
624,425 + -0.8
624,426 - -0.6
624,449 + +0.2
624,449 + +0.4
624,455 - -0.2
624,467 + -0.5
624,467 + -0.1
624,467 + +0.0
624,467 + -1.1
624,467 + +0.6
624,467 + -1.1
624,467 + +1.2
624,468 - -1.3
624,468 - -0.7
624,533 + +0.4
624,533 + -0.1
624,534 - -1.6
624,534 - +1.4
624,576 + -0.3
624,576 + -0.3
624,580 + +1.0
624,581 - -0.8
624,581 - +0.4
624,598 + +0.3
624,598 + -1.5
624,628 - +1.4
624,628 - -0.8
624,628 - +0.4
624,630 + +0.7
624,630 + -0.1
624,630 + +0.2
624,630 + -0.5
624,631 - -0.2
624,738 - IAI46_02925 0.21 -0.8
624,738 - IAI46_02925 0.21 +0.6
624,773 - IAI46_02925 0.26 -0.7
624,773 - IAI46_02925 0.26 +0.8
624,797 + IAI46_02925 0.30 -0.4
624,798 - IAI46_02925 0.30 -1.0
624,798 - IAI46_02925 0.30 -0.9
624,901 + IAI46_02925 0.44 +0.3
624,988 + IAI46_02925 0.56 -0.5
624,988 + IAI46_02925 0.56 +1.4
624,989 - IAI46_02925 0.56 -0.3
625,061 + IAI46_02925 0.66 -0.6
625,063 + IAI46_02925 0.66 -0.5
625,063 + IAI46_02925 0.66 +1.4
625,100 + IAI46_02925 0.71 +0.9
625,101 - IAI46_02925 0.71 +0.2
625,139 + IAI46_02925 0.76 +0.1
625,139 + IAI46_02925 0.76 -0.3
625,140 - IAI46_02925 0.76 -0.1
625,140 - IAI46_02925 0.76 +0.2
625,140 - IAI46_02925 0.76 -2.0
625,196 - IAI46_02925 0.84 +1.1
625,311 - -0.4
625,317 - +0.5
625,354 + -0.2
625,355 - +0.1
625,355 - -0.2
625,355 - +0.3
625,355 - +0.7
625,366 + +1.3
625,366 + +0.7
625,366 + +0.8
625,366 + +1.8
625,366 + +0.1
625,366 + -0.1
625,367 - +1.0
625,367 - -0.1
625,367 - +0.3
625,374 + +0.8
625,375 - -0.5
625,375 - +2.0
625,375 - +0.6

Or see this region's nucleotide sequence