Strain Fitness in Serratia liquefaciens MT49 around IAI46_01795

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01790 and IAI46_01795 are separated by 37 nucleotidesIAI46_01795 and IAI46_01800 are separated by 168 nucleotides IAI46_01790: IAI46_01790 - Tar ligand binding domain-containing protein, at 389,048 to 390,601 _01790 IAI46_01795: IAI46_01795 - class 1 fructose-bisphosphatase, at 390,639 to 391,643 _01795 IAI46_01800: IAI46_01800 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 391,812 to 393,191 _01800 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1at 389.741 kb on - strand, within IAI46_01790at 389.741 kb on - strand, within IAI46_01790at 389.741 kb on - strand, within IAI46_01790at 389.767 kb on + strand, within IAI46_01790at 389.767 kb on + strand, within IAI46_01790at 389.767 kb on + strand, within IAI46_01790at 389.768 kb on - strand, within IAI46_01790at 389.768 kb on - strand, within IAI46_01790at 389.929 kb on + strand, within IAI46_01790at 390.045 kb on + strand, within IAI46_01790at 390.046 kb on - strand, within IAI46_01790at 390.116 kb on - strand, within IAI46_01790at 390.116 kb on - strand, within IAI46_01790at 390.454 kb on + strandat 390.455 kb on - strandat 390.466 kb on - strandat 390.597 kb on + strandat 390.598 kb on - strandat 390.599 kb on + strandat 390.663 kb on - strandat 390.750 kb on - strand, within IAI46_01795at 390.818 kb on - strand, within IAI46_01795at 390.818 kb on - strand, within IAI46_01795at 390.862 kb on + strand, within IAI46_01795at 390.868 kb on + strand, within IAI46_01795at 390.869 kb on - strand, within IAI46_01795at 390.869 kb on - strand, within IAI46_01795at 390.922 kb on + strand, within IAI46_01795at 390.922 kb on + strand, within IAI46_01795at 390.923 kb on - strand, within IAI46_01795at 390.933 kb on - strand, within IAI46_01795at 390.934 kb on + strand, within IAI46_01795at 390.934 kb on + strand, within IAI46_01795at 390.934 kb on + strand, within IAI46_01795at 390.934 kb on + strand, within IAI46_01795at 390.935 kb on - strand, within IAI46_01795at 390.935 kb on - strand, within IAI46_01795at 390.935 kb on - strand, within IAI46_01795at 390.935 kb on - strand, within IAI46_01795at 390.935 kb on - strand, within IAI46_01795at 390.948 kb on - strand, within IAI46_01795at 390.948 kb on - strand, within IAI46_01795at 390.970 kb on + strand, within IAI46_01795at 390.979 kb on + strand, within IAI46_01795at 391.010 kb on - strand, within IAI46_01795at 391.010 kb on - strand, within IAI46_01795at 391.013 kb on + strand, within IAI46_01795at 391.013 kb on + strand, within IAI46_01795at 391.013 kb on + strand, within IAI46_01795at 391.014 kb on - strand, within IAI46_01795at 391.030 kb on + strand, within IAI46_01795at 391.030 kb on + strand, within IAI46_01795at 391.034 kb on + strand, within IAI46_01795at 391.034 kb on + strand, within IAI46_01795at 391.035 kb on - strand, within IAI46_01795at 391.035 kb on - strand, within IAI46_01795at 391.099 kb on + strand, within IAI46_01795at 391.099 kb on + strand, within IAI46_01795at 391.099 kb on + strand, within IAI46_01795at 391.103 kb on + strand, within IAI46_01795at 391.104 kb on - strand, within IAI46_01795at 391.132 kb on + strand, within IAI46_01795at 391.133 kb on - strand, within IAI46_01795at 391.166 kb on - strand, within IAI46_01795at 391.247 kb on - strand, within IAI46_01795at 391.251 kb on - strand, within IAI46_01795at 391.324 kb on + strand, within IAI46_01795at 391.324 kb on + strand, within IAI46_01795at 391.325 kb on - strand, within IAI46_01795at 391.325 kb on - strand, within IAI46_01795at 391.473 kb on + strand, within IAI46_01795at 391.474 kb on - strand, within IAI46_01795at 391.503 kb on - strand, within IAI46_01795at 391.556 kb on + strandat 391.569 kb on + strandat 391.699 kb on - strandat 391.732 kb on - strandat 391.773 kb on + strandat 391.773 kb on + strandat 391.773 kb on + strandat 391.795 kb on + strandat 391.795 kb on + strandat 391.796 kb on - strandat 391.796 kb on - strandat 391.796 kb on - strandat 391.796 kb on - strandat 391.796 kb on - strandat 391.800 kb on + strandat 391.801 kb on - strandat 391.801 kb on - strandat 391.811 kb on + strandat 391.811 kb on + strandat 391.811 kb on + strandat 391.848 kb on - strandat 391.908 kb on - strandat 391.914 kb on + strandat 391.915 kb on - strandat 391.969 kb on - strand, within IAI46_01800at 392.033 kb on + strand, within IAI46_01800at 392.074 kb on - strand, within IAI46_01800at 392.074 kb on - strand, within IAI46_01800at 392.103 kb on + strand, within IAI46_01800at 392.104 kb on - strand, within IAI46_01800at 392.104 kb on - strand, within IAI46_01800at 392.160 kb on - strand, within IAI46_01800at 392.296 kb on - strand, within IAI46_01800at 392.338 kb on - strand, within IAI46_01800at 392.338 kb on - strand, within IAI46_01800at 392.348 kb on + strand, within IAI46_01800at 392.348 kb on + strand, within IAI46_01800at 392.364 kb on - strand, within IAI46_01800at 392.387 kb on + strand, within IAI46_01800at 392.388 kb on - strand, within IAI46_01800at 392.474 kb on + strand, within IAI46_01800at 392.586 kb on + strand, within IAI46_01800at 392.587 kb on - strand, within IAI46_01800at 392.587 kb on - strand, within IAI46_01800

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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389,741 - IAI46_01790 0.45 +0.0
389,741 - IAI46_01790 0.45 +0.1
389,741 - IAI46_01790 0.45 +0.4
389,767 + IAI46_01790 0.46 -0.1
389,767 + IAI46_01790 0.46 -0.4
389,767 + IAI46_01790 0.46 +0.4
389,768 - IAI46_01790 0.46 +0.1
389,768 - IAI46_01790 0.46 +0.8
389,929 + IAI46_01790 0.57 +1.2
390,045 + IAI46_01790 0.64 +0.1
390,046 - IAI46_01790 0.64 -0.2
390,116 - IAI46_01790 0.69 +0.4
390,116 - IAI46_01790 0.69 +0.2
390,454 + +0.0
390,455 - +0.9
390,466 - +0.2
390,597 + -1.1
390,598 - +0.8
390,599 + +0.5
390,663 - +0.2
390,750 - IAI46_01795 0.11 -0.1
390,818 - IAI46_01795 0.18 +0.4
390,818 - IAI46_01795 0.18 +0.1
390,862 + IAI46_01795 0.22 +0.4
390,868 + IAI46_01795 0.23 +1.2
390,869 - IAI46_01795 0.23 +0.4
390,869 - IAI46_01795 0.23 +1.2
390,922 + IAI46_01795 0.28 +0.1
390,922 + IAI46_01795 0.28 +1.2
390,923 - IAI46_01795 0.28 -0.8
390,933 - IAI46_01795 0.29 -0.1
390,934 + IAI46_01795 0.29 +0.5
390,934 + IAI46_01795 0.29 -0.3
390,934 + IAI46_01795 0.29 -0.3
390,934 + IAI46_01795 0.29 +1.2
390,935 - IAI46_01795 0.29 +0.5
390,935 - IAI46_01795 0.29 +0.3
390,935 - IAI46_01795 0.29 +0.2
390,935 - IAI46_01795 0.29 +1.4
390,935 - IAI46_01795 0.29 +0.7
390,948 - IAI46_01795 0.31 -0.2
390,948 - IAI46_01795 0.31 -0.2
390,970 + IAI46_01795 0.33 -1.1
390,979 + IAI46_01795 0.34 +0.1
391,010 - IAI46_01795 0.37 -0.1
391,010 - IAI46_01795 0.37 -0.1
391,013 + IAI46_01795 0.37 +1.0
391,013 + IAI46_01795 0.37 +0.1
391,013 + IAI46_01795 0.37 +1.2
391,014 - IAI46_01795 0.37 +0.5
391,030 + IAI46_01795 0.39 +0.5
391,030 + IAI46_01795 0.39 +0.2
391,034 + IAI46_01795 0.39 +0.7
391,034 + IAI46_01795 0.39 +0.4
391,035 - IAI46_01795 0.39 -0.3
391,035 - IAI46_01795 0.39 -0.9
391,099 + IAI46_01795 0.46 -0.8
391,099 + IAI46_01795 0.46 +0.6
391,099 + IAI46_01795 0.46 -0.2
391,103 + IAI46_01795 0.46 +0.6
391,104 - IAI46_01795 0.46 -0.4
391,132 + IAI46_01795 0.49 -0.3
391,133 - IAI46_01795 0.49 -0.6
391,166 - IAI46_01795 0.52 +0.1
391,247 - IAI46_01795 0.60 -0.6
391,251 - IAI46_01795 0.61 -0.2
391,324 + IAI46_01795 0.68 -0.8
391,324 + IAI46_01795 0.68 +0.3
391,325 - IAI46_01795 0.68 +0.2
391,325 - IAI46_01795 0.68 +0.1
391,473 + IAI46_01795 0.83 +0.1
391,474 - IAI46_01795 0.83 +0.4
391,503 - IAI46_01795 0.86 -0.2
391,556 + +0.3
391,569 + -0.3
391,699 - +0.2
391,732 - +0.3
391,773 + +0.2
391,773 + +0.3
391,773 + -0.3
391,795 + -0.0
391,795 + -0.1
391,796 - +1.2
391,796 - -0.5
391,796 - +0.7
391,796 - -0.2
391,796 - -0.8
391,800 + +0.8
391,801 - -1.1
391,801 - +1.0
391,811 + +0.3
391,811 + +0.0
391,811 + +0.2
391,848 - +1.2
391,908 - -0.1
391,914 + -0.4
391,915 - +0.5
391,969 - IAI46_01800 0.11 -0.0
392,033 + IAI46_01800 0.16 -0.2
392,074 - IAI46_01800 0.19 +0.1
392,074 - IAI46_01800 0.19 +0.5
392,103 + IAI46_01800 0.21 +0.7
392,104 - IAI46_01800 0.21 +0.3
392,104 - IAI46_01800 0.21 +0.0
392,160 - IAI46_01800 0.25 -0.3
392,296 - IAI46_01800 0.35 -1.3
392,338 - IAI46_01800 0.38 -0.1
392,338 - IAI46_01800 0.38 +1.2
392,348 + IAI46_01800 0.39 +0.6
392,348 + IAI46_01800 0.39 -0.4
392,364 - IAI46_01800 0.40 +0.8
392,387 + IAI46_01800 0.42 +0.6
392,388 - IAI46_01800 0.42 -0.1
392,474 + IAI46_01800 0.48 -1.9
392,586 + IAI46_01800 0.56 +0.3
392,587 - IAI46_01800 0.56 -2.8
392,587 - IAI46_01800 0.56 +0.2

Or see this region's nucleotide sequence