Strain Fitness in Serratia liquefaciens MT49 around IAI46_00775

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00770 and IAI46_00775 are separated by 12 nucleotidesIAI46_00775 and IAI46_00780 are separated by 51 nucleotidesIAI46_00780 and IAI46_00785 are separated by 135 nucleotides IAI46_00770: IAI46_00770 - ATP-dependent DNA helicase RecQ, at 175,138 to 176,970 _00770 IAI46_00775: IAI46_00775 - threonine export protein RhtC, at 176,983 to 177,609 _00775 IAI46_00780: IAI46_00780 - homoserine/homoserine lactone efflux protein, at 177,661 to 178,281 _00780 IAI46_00785: IAI46_00785 - lysophospholipase L2, at 178,417 to 179,454 _00785 Position (kb) 176 177 178Strain fitness (log2 ratio) -1 0 1at 175.998 kb on - strand, within IAI46_00770at 176.041 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.146 kb on - strand, within IAI46_00770at 176.146 kb on - strand, within IAI46_00770at 176.156 kb on - strand, within IAI46_00770at 176.156 kb on - strand, within IAI46_00770at 176.156 kb on - strand, within IAI46_00770at 176.295 kb on + strand, within IAI46_00770at 176.295 kb on + strand, within IAI46_00770at 176.296 kb on - strand, within IAI46_00770at 176.299 kb on + strand, within IAI46_00770at 176.341 kb on - strand, within IAI46_00770at 176.366 kb on - strand, within IAI46_00770at 176.408 kb on - strand, within IAI46_00770at 176.437 kb on + strand, within IAI46_00770at 176.467 kb on - strand, within IAI46_00770at 176.476 kb on - strand, within IAI46_00770at 176.509 kb on + strand, within IAI46_00770at 176.509 kb on + strand, within IAI46_00770at 176.509 kb on + strand, within IAI46_00770at 176.735 kb on - strand, within IAI46_00770at 176.806 kb on + strandat 176.806 kb on + strandat 176.806 kb on + strandat 176.806 kb on + strandat 176.807 kb on - strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.968 kb on + strandat 176.968 kb on + strandat 176.968 kb on + strandat 176.969 kb on - strandat 176.969 kb on - strandat 176.969 kb on - strandat 176.978 kb on - strandat 177.201 kb on + strand, within IAI46_00775at 177.202 kb on - strand, within IAI46_00775at 177.202 kb on - strand, within IAI46_00775at 177.204 kb on + strand, within IAI46_00775at 177.204 kb on + strand, within IAI46_00775at 177.205 kb on - strand, within IAI46_00775at 177.205 kb on - strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.315 kb on + strand, within IAI46_00775at 177.333 kb on + strand, within IAI46_00775at 177.375 kb on + strand, within IAI46_00775at 177.379 kb on + strand, within IAI46_00775at 177.379 kb on + strand, within IAI46_00775at 177.380 kb on - strand, within IAI46_00775at 177.380 kb on - strand, within IAI46_00775at 177.526 kb on + strand, within IAI46_00775at 177.566 kb on + strandat 177.567 kb on - strandat 177.567 kb on - strandat 177.768 kb on + strand, within IAI46_00780at 177.822 kb on + strand, within IAI46_00780at 177.823 kb on - strand, within IAI46_00780at 177.823 kb on - strand, within IAI46_00780at 177.835 kb on + strand, within IAI46_00780at 177.836 kb on - strand, within IAI46_00780at 177.842 kb on + strand, within IAI46_00780at 177.981 kb on + strand, within IAI46_00780at 177.981 kb on + strand, within IAI46_00780at 177.982 kb on - strand, within IAI46_00780at 177.982 kb on - strand, within IAI46_00780at 178.037 kb on + strand, within IAI46_00780at 178.037 kb on + strand, within IAI46_00780at 178.256 kb on + strandat 178.256 kb on + strandat 178.257 kb on - strandat 178.349 kb on + strandat 178.349 kb on + strandat 178.350 kb on - strandat 178.354 kb on + strandat 178.354 kb on + strandat 178.360 kb on + strandat 178.360 kb on + strandat 178.361 kb on - strandat 178.429 kb on - strandat 178.562 kb on + strand, within IAI46_00785at 178.601 kb on + strand, within IAI46_00785at 178.602 kb on - strand, within IAI46_00785at 178.602 kb on - strand, within IAI46_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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175,998 - IAI46_00770 0.47 +0.3
176,041 - IAI46_00770 0.49 -0.8
176,096 - IAI46_00770 0.52 +0.3
176,096 - IAI46_00770 0.52 +0.4
176,096 - IAI46_00770 0.52 -0.8
176,096 - IAI46_00770 0.52 -0.2
176,145 + IAI46_00770 0.55 +0.1
176,145 + IAI46_00770 0.55 -0.5
176,145 + IAI46_00770 0.55 -0.3
176,145 + IAI46_00770 0.55 +0.7
176,146 - IAI46_00770 0.55 +0.3
176,146 - IAI46_00770 0.55 +0.5
176,156 - IAI46_00770 0.56 -1.5
176,156 - IAI46_00770 0.56 -0.8
176,156 - IAI46_00770 0.56 +0.4
176,295 + IAI46_00770 0.63 +0.9
176,295 + IAI46_00770 0.63 +0.7
176,296 - IAI46_00770 0.63 -0.9
176,299 + IAI46_00770 0.63 +0.4
176,341 - IAI46_00770 0.66 -1.2
176,366 - IAI46_00770 0.67 -0.0
176,408 - IAI46_00770 0.69 +0.3
176,437 + IAI46_00770 0.71 -0.2
176,467 - IAI46_00770 0.73 +0.3
176,476 - IAI46_00770 0.73 -0.3
176,509 + IAI46_00770 0.75 +1.2
176,509 + IAI46_00770 0.75 +0.8
176,509 + IAI46_00770 0.75 -0.2
176,735 - IAI46_00770 0.87 +1.1
176,806 + +0.2
176,806 + -0.4
176,806 + +1.4
176,806 + +0.2
176,807 - -0.2
176,826 + +0.1
176,826 + +0.2
176,826 + +0.6
176,826 + +0.2
176,826 + +0.0
176,827 - +0.6
176,827 - +0.5
176,827 - -0.1
176,827 - +0.4
176,827 - +0.4
176,827 - +0.1
176,827 - +0.2
176,968 + +0.1
176,968 + +0.2
176,968 + +0.3
176,969 - +0.1
176,969 - +0.6
176,969 - -0.2
176,978 - -0.0
177,201 + IAI46_00775 0.35 -0.7
177,202 - IAI46_00775 0.35 -0.3
177,202 - IAI46_00775 0.35 -0.5
177,204 + IAI46_00775 0.35 +0.7
177,204 + IAI46_00775 0.35 +0.4
177,205 - IAI46_00775 0.35 -0.8
177,205 - IAI46_00775 0.35 -1.5
177,223 + IAI46_00775 0.38 +0.5
177,223 + IAI46_00775 0.38 -0.5
177,223 + IAI46_00775 0.38 +0.2
177,223 + IAI46_00775 0.38 +1.0
177,223 + IAI46_00775 0.38 +0.6
177,223 + IAI46_00775 0.38 -0.0
177,224 - IAI46_00775 0.38 -0.2
177,224 - IAI46_00775 0.38 +0.2
177,224 - IAI46_00775 0.38 +0.3
177,224 - IAI46_00775 0.38 +0.3
177,315 + IAI46_00775 0.53 -1.5
177,333 + IAI46_00775 0.56 +1.4
177,375 + IAI46_00775 0.63 -0.3
177,379 + IAI46_00775 0.63 +0.4
177,379 + IAI46_00775 0.63 +0.8
177,380 - IAI46_00775 0.63 +0.8
177,380 - IAI46_00775 0.63 +0.2
177,526 + IAI46_00775 0.87 +0.4
177,566 + +0.2
177,567 - -0.9
177,567 - -0.1
177,768 + IAI46_00780 0.17 -0.0
177,822 + IAI46_00780 0.26 +0.4
177,823 - IAI46_00780 0.26 +0.5
177,823 - IAI46_00780 0.26 +0.6
177,835 + IAI46_00780 0.28 +0.0
177,836 - IAI46_00780 0.28 -0.1
177,842 + IAI46_00780 0.29 -0.3
177,981 + IAI46_00780 0.52 -1.5
177,981 + IAI46_00780 0.52 -0.1
177,982 - IAI46_00780 0.52 +1.5
177,982 - IAI46_00780 0.52 +0.2
178,037 + IAI46_00780 0.61 -0.3
178,037 + IAI46_00780 0.61 +0.4
178,256 + +0.6
178,256 + +0.5
178,257 - -0.1
178,349 + -0.1
178,349 + +0.7
178,350 - -0.1
178,354 + -0.6
178,354 + -0.0
178,360 + -1.4
178,360 + -0.1
178,361 - -0.1
178,429 - -0.5
178,562 + IAI46_00785 0.14 +1.5
178,601 + IAI46_00785 0.18 -0.7
178,602 - IAI46_00785 0.18 -0.8
178,602 - IAI46_00785 0.18 +0.5

Or see this region's nucleotide sequence