Strain Fitness in Serratia liquefaciens MT49 around IAI46_00770

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00765 and IAI46_00770 are separated by 48 nucleotidesIAI46_00770 and IAI46_00775 are separated by 12 nucleotidesIAI46_00775 and IAI46_00780 are separated by 51 nucleotides IAI46_00765: IAI46_00765 - phospholipase A, at 174,211 to 175,089 _00765 IAI46_00770: IAI46_00770 - ATP-dependent DNA helicase RecQ, at 175,138 to 176,970 _00770 IAI46_00775: IAI46_00775 - threonine export protein RhtC, at 176,983 to 177,609 _00775 IAI46_00780: IAI46_00780 - homoserine/homoserine lactone efflux protein, at 177,661 to 178,281 _00780 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 174.154 kb on + strandat 174.154 kb on + strandat 174.154 kb on + strandat 174.300 kb on + strand, within IAI46_00765at 174.312 kb on - strand, within IAI46_00765at 174.324 kb on + strand, within IAI46_00765at 174.360 kb on + strand, within IAI46_00765at 174.360 kb on + strand, within IAI46_00765at 174.367 kb on + strand, within IAI46_00765at 174.368 kb on - strand, within IAI46_00765at 174.385 kb on + strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.386 kb on - strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.394 kb on + strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.395 kb on - strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.411 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.436 kb on + strand, within IAI46_00765at 174.437 kb on - strand, within IAI46_00765at 174.544 kb on + strand, within IAI46_00765at 174.544 kb on + strand, within IAI46_00765at 174.544 kb on + strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.545 kb on - strand, within IAI46_00765at 174.546 kb on + strand, within IAI46_00765at 174.547 kb on - strand, within IAI46_00765at 174.547 kb on - strand, within IAI46_00765at 174.610 kb on + strand, within IAI46_00765at 174.610 kb on + strand, within IAI46_00765at 174.610 kb on + strand, within IAI46_00765at 174.611 kb on - strand, within IAI46_00765at 174.611 kb on - strand, within IAI46_00765at 174.756 kb on + strand, within IAI46_00765at 174.757 kb on - strand, within IAI46_00765at 174.757 kb on - strand, within IAI46_00765at 174.757 kb on - strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.850 kb on + strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.851 kb on - strand, within IAI46_00765at 174.862 kb on + strand, within IAI46_00765at 174.863 kb on - strand, within IAI46_00765at 174.880 kb on + strand, within IAI46_00765at 174.881 kb on - strand, within IAI46_00765at 174.919 kb on + strand, within IAI46_00765at 174.919 kb on + strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.920 kb on - strand, within IAI46_00765at 174.922 kb on - strand, within IAI46_00765at 174.922 kb on - strand, within IAI46_00765at 174.922 kb on - strand, within IAI46_00765at 174.991 kb on + strand, within IAI46_00765at 174.991 kb on + strand, within IAI46_00765at 175.034 kb on - strandat 175.080 kb on + strandat 175.080 kb on + strandat 175.080 kb on + strandat 175.080 kb on + strandat 175.080 kb on + strandat 175.080 kb on + strandat 175.081 kb on - strandat 175.081 kb on - strandat 175.081 kb on - strandat 175.081 kb on - strandat 175.081 kb on - strandat 175.083 kb on + strandat 175.083 kb on + strandat 175.083 kb on + strandat 175.083 kb on + strandat 175.083 kb on + strandat 175.083 kb on + strandat 175.084 kb on - strandat 175.084 kb on - strandat 175.084 kb on - strandat 175.087 kb on + strandat 175.087 kb on + strandat 175.184 kb on + strandat 175.184 kb on + strandat 175.184 kb on + strandat 175.195 kb on - strandat 175.195 kb on - strandat 175.275 kb on + strandat 175.276 kb on - strandat 175.276 kb on - strandat 175.306 kb on + strandat 175.306 kb on + strandat 175.307 kb on - strandat 175.344 kb on - strand, within IAI46_00770at 175.344 kb on - strand, within IAI46_00770at 175.399 kb on + strand, within IAI46_00770at 175.420 kb on + strand, within IAI46_00770at 175.423 kb on - strand, within IAI46_00770at 175.423 kb on - strand, within IAI46_00770at 175.495 kb on + strand, within IAI46_00770at 175.495 kb on + strand, within IAI46_00770at 175.495 kb on + strand, within IAI46_00770at 175.496 kb on - strand, within IAI46_00770at 175.587 kb on + strand, within IAI46_00770at 175.587 kb on + strand, within IAI46_00770at 175.587 kb on + strand, within IAI46_00770at 175.587 kb on + strand, within IAI46_00770at 175.588 kb on - strand, within IAI46_00770at 175.588 kb on - strand, within IAI46_00770at 175.588 kb on - strand, within IAI46_00770at 175.588 kb on - strand, within IAI46_00770at 175.621 kb on + strand, within IAI46_00770at 175.621 kb on + strand, within IAI46_00770at 175.621 kb on + strand, within IAI46_00770at 175.698 kb on + strand, within IAI46_00770at 175.746 kb on - strand, within IAI46_00770at 175.780 kb on + strand, within IAI46_00770at 175.781 kb on - strand, within IAI46_00770at 175.782 kb on + strand, within IAI46_00770at 175.782 kb on + strand, within IAI46_00770at 175.782 kb on + strand, within IAI46_00770at 175.782 kb on + strand, within IAI46_00770at 175.783 kb on - strand, within IAI46_00770at 175.783 kb on - strand, within IAI46_00770at 175.783 kb on - strand, within IAI46_00770at 175.800 kb on + strand, within IAI46_00770at 175.801 kb on - strand, within IAI46_00770at 175.829 kb on + strand, within IAI46_00770at 175.829 kb on + strand, within IAI46_00770at 175.857 kb on + strand, within IAI46_00770at 175.857 kb on + strand, within IAI46_00770at 175.858 kb on - strand, within IAI46_00770at 175.998 kb on - strand, within IAI46_00770at 176.041 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.096 kb on - strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.145 kb on + strand, within IAI46_00770at 176.146 kb on - strand, within IAI46_00770at 176.146 kb on - strand, within IAI46_00770at 176.156 kb on - strand, within IAI46_00770at 176.156 kb on - strand, within IAI46_00770at 176.156 kb on - strand, within IAI46_00770at 176.295 kb on + strand, within IAI46_00770at 176.295 kb on + strand, within IAI46_00770at 176.296 kb on - strand, within IAI46_00770at 176.299 kb on + strand, within IAI46_00770at 176.341 kb on - strand, within IAI46_00770at 176.366 kb on - strand, within IAI46_00770at 176.408 kb on - strand, within IAI46_00770at 176.437 kb on + strand, within IAI46_00770at 176.467 kb on - strand, within IAI46_00770at 176.476 kb on - strand, within IAI46_00770at 176.509 kb on + strand, within IAI46_00770at 176.509 kb on + strand, within IAI46_00770at 176.509 kb on + strand, within IAI46_00770at 176.735 kb on - strand, within IAI46_00770at 176.806 kb on + strandat 176.806 kb on + strandat 176.806 kb on + strandat 176.806 kb on + strandat 176.807 kb on - strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.826 kb on + strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.827 kb on - strandat 176.968 kb on + strandat 176.968 kb on + strandat 176.968 kb on + strandat 176.969 kb on - strandat 176.969 kb on - strandat 176.969 kb on - strandat 176.978 kb on - strandat 177.201 kb on + strand, within IAI46_00775at 177.202 kb on - strand, within IAI46_00775at 177.202 kb on - strand, within IAI46_00775at 177.204 kb on + strand, within IAI46_00775at 177.204 kb on + strand, within IAI46_00775at 177.205 kb on - strand, within IAI46_00775at 177.205 kb on - strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.223 kb on + strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.224 kb on - strand, within IAI46_00775at 177.315 kb on + strand, within IAI46_00775at 177.333 kb on + strand, within IAI46_00775at 177.375 kb on + strand, within IAI46_00775at 177.379 kb on + strand, within IAI46_00775at 177.379 kb on + strand, within IAI46_00775at 177.380 kb on - strand, within IAI46_00775at 177.380 kb on - strand, within IAI46_00775at 177.526 kb on + strand, within IAI46_00775at 177.566 kb on + strandat 177.567 kb on - strandat 177.567 kb on - strandat 177.768 kb on + strand, within IAI46_00780at 177.822 kb on + strand, within IAI46_00780at 177.823 kb on - strand, within IAI46_00780at 177.823 kb on - strand, within IAI46_00780at 177.835 kb on + strand, within IAI46_00780at 177.836 kb on - strand, within IAI46_00780at 177.842 kb on + strand, within IAI46_00780

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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174,154 + +0.2
174,154 + -0.3
174,154 + +0.1
174,300 + IAI46_00765 0.10 -2.5
174,312 - IAI46_00765 0.11 -0.2
174,324 + IAI46_00765 0.13 -0.3
174,360 + IAI46_00765 0.17 +0.3
174,360 + IAI46_00765 0.17 -0.1
174,367 + IAI46_00765 0.18 +0.0
174,368 - IAI46_00765 0.18 -1.3
174,385 + IAI46_00765 0.20 +0.1
174,386 - IAI46_00765 0.20 -0.2
174,386 - IAI46_00765 0.20 +0.7
174,386 - IAI46_00765 0.20 +0.9
174,386 - IAI46_00765 0.20 -0.3
174,386 - IAI46_00765 0.20 -0.5
174,394 + IAI46_00765 0.21 +1.1
174,394 + IAI46_00765 0.21 -0.4
174,394 + IAI46_00765 0.21 +0.0
174,394 + IAI46_00765 0.21 +0.6
174,394 + IAI46_00765 0.21 +0.8
174,395 - IAI46_00765 0.21 +0.0
174,395 - IAI46_00765 0.21 -0.4
174,395 - IAI46_00765 0.21 -0.4
174,411 + IAI46_00765 0.23 +0.9
174,411 + IAI46_00765 0.23 +0.7
174,411 + IAI46_00765 0.23 -0.5
174,436 + IAI46_00765 0.26 +0.8
174,436 + IAI46_00765 0.26 +1.4
174,436 + IAI46_00765 0.26 -0.3
174,437 - IAI46_00765 0.26 +0.0
174,544 + IAI46_00765 0.38 -0.0
174,544 + IAI46_00765 0.38 +0.2
174,544 + IAI46_00765 0.38 -0.2
174,545 - IAI46_00765 0.38 -0.8
174,545 - IAI46_00765 0.38 +0.2
174,545 - IAI46_00765 0.38 +0.3
174,545 - IAI46_00765 0.38 +0.1
174,546 + IAI46_00765 0.38 +1.0
174,547 - IAI46_00765 0.38 -0.6
174,547 - IAI46_00765 0.38 -0.4
174,610 + IAI46_00765 0.45 -0.4
174,610 + IAI46_00765 0.45 +0.7
174,610 + IAI46_00765 0.45 -1.2
174,611 - IAI46_00765 0.46 +0.3
174,611 - IAI46_00765 0.46 -0.2
174,756 + IAI46_00765 0.62 +0.7
174,757 - IAI46_00765 0.62 -0.3
174,757 - IAI46_00765 0.62 +0.2
174,757 - IAI46_00765 0.62 +0.3
174,850 + IAI46_00765 0.73 +0.3
174,850 + IAI46_00765 0.73 -0.8
174,850 + IAI46_00765 0.73 +0.3
174,850 + IAI46_00765 0.73 -0.8
174,851 - IAI46_00765 0.73 +0.2
174,851 - IAI46_00765 0.73 +0.2
174,851 - IAI46_00765 0.73 -0.1
174,851 - IAI46_00765 0.73 +0.5
174,862 + IAI46_00765 0.74 +1.1
174,863 - IAI46_00765 0.74 +0.1
174,880 + IAI46_00765 0.76 -0.2
174,881 - IAI46_00765 0.76 -0.8
174,919 + IAI46_00765 0.81 +0.4
174,919 + IAI46_00765 0.81 -0.8
174,920 - IAI46_00765 0.81 +1.2
174,920 - IAI46_00765 0.81 -0.5
174,920 - IAI46_00765 0.81 +0.6
174,920 - IAI46_00765 0.81 +0.5
174,920 - IAI46_00765 0.81 -0.2
174,922 - IAI46_00765 0.81 -1.5
174,922 - IAI46_00765 0.81 +0.1
174,922 - IAI46_00765 0.81 +0.6
174,991 + IAI46_00765 0.89 -0.2
174,991 + IAI46_00765 0.89 +0.0
175,034 - -0.4
175,080 + +0.2
175,080 + +0.1
175,080 + +0.4
175,080 + -1.2
175,080 + +0.7
175,080 + +0.5
175,081 - -0.9
175,081 - +0.1
175,081 - -0.4
175,081 - +0.9
175,081 - +0.4
175,083 + +0.6
175,083 + +0.4
175,083 + +0.1
175,083 + -1.3
175,083 + -0.4
175,083 + -0.4
175,084 - +0.4
175,084 - -0.0
175,084 - -0.1
175,087 + +0.2
175,087 + +0.2
175,184 + +0.2
175,184 + +0.8
175,184 + +0.0
175,195 - +0.3
175,195 - +1.0
175,275 + +0.3
175,276 - +0.2
175,276 - -0.4
175,306 + -0.2
175,306 + -0.1
175,307 - -0.0
175,344 - IAI46_00770 0.11 -0.2
175,344 - IAI46_00770 0.11 -0.3
175,399 + IAI46_00770 0.14 +0.4
175,420 + IAI46_00770 0.15 +0.5
175,423 - IAI46_00770 0.16 -0.6
175,423 - IAI46_00770 0.16 +0.3
175,495 + IAI46_00770 0.19 -0.3
175,495 + IAI46_00770 0.19 +0.7
175,495 + IAI46_00770 0.19 +0.7
175,496 - IAI46_00770 0.20 -0.5
175,587 + IAI46_00770 0.24 -0.7
175,587 + IAI46_00770 0.24 +0.2
175,587 + IAI46_00770 0.24 +0.0
175,587 + IAI46_00770 0.24 +0.7
175,588 - IAI46_00770 0.25 -0.5
175,588 - IAI46_00770 0.25 +0.2
175,588 - IAI46_00770 0.25 -0.5
175,588 - IAI46_00770 0.25 -2.1
175,621 + IAI46_00770 0.26 +0.9
175,621 + IAI46_00770 0.26 +0.6
175,621 + IAI46_00770 0.26 +0.8
175,698 + IAI46_00770 0.31 +0.2
175,746 - IAI46_00770 0.33 +0.3
175,780 + IAI46_00770 0.35 -0.1
175,781 - IAI46_00770 0.35 -1.5
175,782 + IAI46_00770 0.35 -0.1
175,782 + IAI46_00770 0.35 +0.4
175,782 + IAI46_00770 0.35 +1.5
175,782 + IAI46_00770 0.35 -0.6
175,783 - IAI46_00770 0.35 -0.0
175,783 - IAI46_00770 0.35 -0.4
175,783 - IAI46_00770 0.35 +0.0
175,800 + IAI46_00770 0.36 -0.4
175,801 - IAI46_00770 0.36 +0.6
175,829 + IAI46_00770 0.38 +1.8
175,829 + IAI46_00770 0.38 -0.4
175,857 + IAI46_00770 0.39 +0.9
175,857 + IAI46_00770 0.39 -0.2
175,858 - IAI46_00770 0.39 +0.1
175,998 - IAI46_00770 0.47 +0.3
176,041 - IAI46_00770 0.49 -0.8
176,096 - IAI46_00770 0.52 +0.3
176,096 - IAI46_00770 0.52 +0.4
176,096 - IAI46_00770 0.52 -0.8
176,096 - IAI46_00770 0.52 -0.2
176,145 + IAI46_00770 0.55 +0.1
176,145 + IAI46_00770 0.55 -0.5
176,145 + IAI46_00770 0.55 -0.3
176,145 + IAI46_00770 0.55 +0.7
176,146 - IAI46_00770 0.55 +0.3
176,146 - IAI46_00770 0.55 +0.5
176,156 - IAI46_00770 0.56 -1.5
176,156 - IAI46_00770 0.56 -0.8
176,156 - IAI46_00770 0.56 +0.4
176,295 + IAI46_00770 0.63 +0.9
176,295 + IAI46_00770 0.63 +0.7
176,296 - IAI46_00770 0.63 -0.9
176,299 + IAI46_00770 0.63 +0.4
176,341 - IAI46_00770 0.66 -1.2
176,366 - IAI46_00770 0.67 -0.0
176,408 - IAI46_00770 0.69 +0.3
176,437 + IAI46_00770 0.71 -0.2
176,467 - IAI46_00770 0.73 +0.3
176,476 - IAI46_00770 0.73 -0.3
176,509 + IAI46_00770 0.75 +1.2
176,509 + IAI46_00770 0.75 +0.8
176,509 + IAI46_00770 0.75 -0.2
176,735 - IAI46_00770 0.87 +1.1
176,806 + +0.2
176,806 + -0.4
176,806 + +1.4
176,806 + +0.2
176,807 - -0.2
176,826 + +0.1
176,826 + +0.2
176,826 + +0.6
176,826 + +0.2
176,826 + +0.0
176,827 - +0.6
176,827 - +0.5
176,827 - -0.1
176,827 - +0.4
176,827 - +0.4
176,827 - +0.1
176,827 - +0.2
176,968 + +0.1
176,968 + +0.2
176,968 + +0.3
176,969 - +0.1
176,969 - +0.6
176,969 - -0.2
176,978 - -0.0
177,201 + IAI46_00775 0.35 -0.7
177,202 - IAI46_00775 0.35 -0.3
177,202 - IAI46_00775 0.35 -0.5
177,204 + IAI46_00775 0.35 +0.7
177,204 + IAI46_00775 0.35 +0.4
177,205 - IAI46_00775 0.35 -0.8
177,205 - IAI46_00775 0.35 -1.5
177,223 + IAI46_00775 0.38 +0.5
177,223 + IAI46_00775 0.38 -0.5
177,223 + IAI46_00775 0.38 +0.2
177,223 + IAI46_00775 0.38 +1.0
177,223 + IAI46_00775 0.38 +0.6
177,223 + IAI46_00775 0.38 -0.0
177,224 - IAI46_00775 0.38 -0.2
177,224 - IAI46_00775 0.38 +0.2
177,224 - IAI46_00775 0.38 +0.3
177,224 - IAI46_00775 0.38 +0.3
177,315 + IAI46_00775 0.53 -1.5
177,333 + IAI46_00775 0.56 +1.4
177,375 + IAI46_00775 0.63 -0.3
177,379 + IAI46_00775 0.63 +0.4
177,379 + IAI46_00775 0.63 +0.8
177,380 - IAI46_00775 0.63 +0.8
177,380 - IAI46_00775 0.63 +0.2
177,526 + IAI46_00775 0.87 +0.4
177,566 + +0.2
177,567 - -0.9
177,567 - -0.1
177,768 + IAI46_00780 0.17 -0.0
177,822 + IAI46_00780 0.26 +0.4
177,823 - IAI46_00780 0.26 +0.5
177,823 - IAI46_00780 0.26 +0.6
177,835 + IAI46_00780 0.28 +0.0
177,836 - IAI46_00780 0.28 -0.1
177,842 + IAI46_00780 0.29 -0.3

Or see this region's nucleotide sequence