Strain Fitness in Serratia liquefaciens MT49 around IAI46_00605

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00600 and IAI46_00605 overlap by 4 nucleotidesIAI46_00605 and IAI46_00610 overlap by 10 nucleotides IAI46_00600: IAI46_00600 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 142,433 to 143,566 _00600 IAI46_00605: IAI46_00605 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 143,563 to 144,825 _00605 IAI46_00610: IAI46_00610 - dTDP-glucose 4,6-dehydratase, at 144,816 to 145,889 _00610 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 142.569 kb on + strand, within IAI46_00600at 142.587 kb on + strand, within IAI46_00600at 142.587 kb on + strand, within IAI46_00600at 142.588 kb on - strand, within IAI46_00600at 142.599 kb on - strand, within IAI46_00600at 142.599 kb on - strand, within IAI46_00600at 142.632 kb on + strand, within IAI46_00600at 142.633 kb on - strand, within IAI46_00600at 142.633 kb on - strand, within IAI46_00600at 142.754 kb on + strand, within IAI46_00600at 142.755 kb on - strand, within IAI46_00600at 142.779 kb on + strand, within IAI46_00600at 142.779 kb on + strand, within IAI46_00600at 142.780 kb on - strand, within IAI46_00600at 142.862 kb on + strand, within IAI46_00600at 142.863 kb on - strand, within IAI46_00600at 142.927 kb on + strand, within IAI46_00600at 142.927 kb on + strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 143.138 kb on - strand, within IAI46_00600at 143.162 kb on + strand, within IAI46_00600at 143.224 kb on + strand, within IAI46_00600at 143.225 kb on - strand, within IAI46_00600at 143.227 kb on + strand, within IAI46_00600at 143.227 kb on + strand, within IAI46_00600at 143.228 kb on - strand, within IAI46_00600at 143.228 kb on - strand, within IAI46_00600at 143.228 kb on - strand, within IAI46_00600at 143.238 kb on + strand, within IAI46_00600at 143.239 kb on - strand, within IAI46_00600at 143.252 kb on + strand, within IAI46_00600at 143.252 kb on + strand, within IAI46_00600at 143.252 kb on + strand, within IAI46_00600at 143.253 kb on - strand, within IAI46_00600at 143.267 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.287 kb on + strand, within IAI46_00600at 143.287 kb on + strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.334 kb on + strand, within IAI46_00600at 143.334 kb on + strand, within IAI46_00600at 143.335 kb on - strand, within IAI46_00600at 143.338 kb on + strand, within IAI46_00600at 143.339 kb on - strand, within IAI46_00600at 143.339 kb on - strand, within IAI46_00600at 143.386 kb on - strand, within IAI46_00600at 143.421 kb on + strand, within IAI46_00600at 143.472 kb on - strandat 143.494 kb on + strandat 143.495 kb on - strandat 143.571 kb on + strandat 143.599 kb on + strandat 143.600 kb on - strandat 143.601 kb on + strandat 143.601 kb on + strandat 143.683 kb on - strandat 143.851 kb on + strand, within IAI46_00605at 144.029 kb on - strand, within IAI46_00605at 144.029 kb on - strand, within IAI46_00605at 144.324 kb on + strand, within IAI46_00605at 144.360 kb on + strand, within IAI46_00605at 144.382 kb on - strand, within IAI46_00605at 144.606 kb on - strand, within IAI46_00605at 144.750 kb on + strandat 144.800 kb on + strandat 144.800 kb on + strandat 144.800 kb on + strandat 144.801 kb on - strandat 144.801 kb on - strandat 144.801 kb on - strandat 144.804 kb on + strandat 144.804 kb on + strandat 144.835 kb on + strandat 145.137 kb on + strand, within IAI46_00610at 145.215 kb on - strand, within IAI46_00610at 145.215 kb on - strand, within IAI46_00610at 145.353 kb on + strand, within IAI46_00610at 145.353 kb on + strand, within IAI46_00610at 145.567 kb on - strand, within IAI46_00610at 145.715 kb on + strand, within IAI46_00610

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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142,569 + IAI46_00600 0.12 -0.6
142,587 + IAI46_00600 0.14 +1.4
142,587 + IAI46_00600 0.14 +0.3
142,588 - IAI46_00600 0.14 -0.6
142,599 - IAI46_00600 0.15 +2.4
142,599 - IAI46_00600 0.15 +1.2
142,632 + IAI46_00600 0.18 +0.4
142,633 - IAI46_00600 0.18 +0.1
142,633 - IAI46_00600 0.18 +2.0
142,754 + IAI46_00600 0.28 -1.2
142,755 - IAI46_00600 0.28 -0.6
142,779 + IAI46_00600 0.31 +0.1
142,779 + IAI46_00600 0.31 -0.1
142,780 - IAI46_00600 0.31 -0.7
142,862 + IAI46_00600 0.38 +1.1
142,863 - IAI46_00600 0.38 -0.2
142,927 + IAI46_00600 0.44 -1.0
142,927 + IAI46_00600 0.44 +0.8
142,928 - IAI46_00600 0.44 +0.0
142,928 - IAI46_00600 0.44 +0.9
142,928 - IAI46_00600 0.44 +1.4
142,928 - IAI46_00600 0.44 -0.4
143,138 - IAI46_00600 0.62 +0.1
143,162 + IAI46_00600 0.64 +0.7
143,224 + IAI46_00600 0.70 +0.8
143,225 - IAI46_00600 0.70 +0.0
143,227 + IAI46_00600 0.70 +0.6
143,227 + IAI46_00600 0.70 -0.3
143,228 - IAI46_00600 0.70 +1.6
143,228 - IAI46_00600 0.70 -0.0
143,228 - IAI46_00600 0.70 +1.8
143,238 + IAI46_00600 0.71 +1.0
143,239 - IAI46_00600 0.71 -0.3
143,252 + IAI46_00600 0.72 +0.2
143,252 + IAI46_00600 0.72 -0.6
143,252 + IAI46_00600 0.72 +0.7
143,253 - IAI46_00600 0.72 +0.0
143,267 + IAI46_00600 0.74 +0.6
143,285 + IAI46_00600 0.75 +0.9
143,285 + IAI46_00600 0.75 +2.4
143,285 + IAI46_00600 0.75 -0.4
143,285 + IAI46_00600 0.75 +0.2
143,285 + IAI46_00600 0.75 +1.4
143,285 + IAI46_00600 0.75 +0.9
143,286 - IAI46_00600 0.75 +1.3
143,286 - IAI46_00600 0.75 +1.5
143,286 - IAI46_00600 0.75 +1.6
143,286 - IAI46_00600 0.75 +0.9
143,286 - IAI46_00600 0.75 +0.3
143,287 + IAI46_00600 0.75 +0.6
143,287 + IAI46_00600 0.75 +4.1
143,288 - IAI46_00600 0.75 +0.5
143,288 - IAI46_00600 0.75 +0.4
143,288 - IAI46_00600 0.75 -0.8
143,288 - IAI46_00600 0.75 +0.8
143,288 - IAI46_00600 0.75 +0.1
143,288 - IAI46_00600 0.75 +1.8
143,288 - IAI46_00600 0.75 +0.5
143,334 + IAI46_00600 0.79 +0.8
143,334 + IAI46_00600 0.79 +0.6
143,335 - IAI46_00600 0.80 +0.1
143,338 + IAI46_00600 0.80 +0.8
143,339 - IAI46_00600 0.80 +0.4
143,339 - IAI46_00600 0.80 -1.6
143,386 - IAI46_00600 0.84 -0.4
143,421 + IAI46_00600 0.87 +0.3
143,472 - -0.3
143,494 + +0.1
143,495 - -0.2
143,571 + -0.5
143,599 + +1.1
143,600 - -0.4
143,601 + +0.5
143,601 + +0.2
143,683 - -0.4
143,851 + IAI46_00605 0.23 +1.7
144,029 - IAI46_00605 0.37 -1.0
144,029 - IAI46_00605 0.37 +1.2
144,324 + IAI46_00605 0.60 +0.9
144,360 + IAI46_00605 0.63 -0.5
144,382 - IAI46_00605 0.65 +0.0
144,606 - IAI46_00605 0.83 +0.7
144,750 + +0.6
144,800 + +1.4
144,800 + +0.0
144,800 + -2.0
144,801 - +0.2
144,801 - +0.5
144,801 - +0.6
144,804 + +0.6
144,804 + +0.5
144,835 + -0.6
145,137 + IAI46_00610 0.30 -0.2
145,215 - IAI46_00610 0.37 +0.8
145,215 - IAI46_00610 0.37 +0.0
145,353 + IAI46_00610 0.50 +0.0
145,353 + IAI46_00610 0.50 -0.6
145,567 - IAI46_00610 0.70 -0.2
145,715 + IAI46_00610 0.84 +0.0

Or see this region's nucleotide sequence