Strain Fitness in Serratia liquefaciens MT49 around IAI46_00410

Experiment: Cobalt chloride 60 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cobalt chloride 60 uM, anaerobic
92,725	+		IAI46_00405	0.48	+0.4
92,725	+		IAI46_00405	0.48	-0.2
92,725	+		IAI46_00405	0.48	+0.9
92,726	-		IAI46_00405	0.48	-0.2
92,726	-		IAI46_00405	0.48	-0.2
92,747	+		IAI46_00405	0.50	-0.1
92,849	+		IAI46_00405	0.57	+0.7
92,849	+		IAI46_00405	0.57	+0.2
92,850	-		IAI46_00405	0.57	-0.1
92,850	-		IAI46_00405	0.57	+0.1
92,850	-		IAI46_00405	0.57	-0.2
92,850	-		IAI46_00405	0.57	-0.0
92,850	-		IAI46_00405	0.57	+0.3
92,851	+		IAI46_00405	0.57	+0.8
92,851	+		IAI46_00405	0.57	+0.5
92,852	-		IAI46_00405	0.57	+0.1
92,852	-		IAI46_00405	0.57	-0.1
92,861	+		IAI46_00405	0.58	+0.7
92,935	+		IAI46_00405	0.63	-0.1
92,936	-		IAI46_00405	0.63	-0.5
92,949	-		IAI46_00405	0.64	+0.2
92,952	-		IAI46_00405	0.64	+0.3
92,952	-		IAI46_00405	0.64	+0.4
92,952	-		IAI46_00405	0.64	-1.1
92,952	-		IAI46_00405	0.64	+0.5
93,016	+		IAI46_00405	0.69	+0.9
93,016	+		IAI46_00405	0.69	-1.6
93,017	-		IAI46_00405	0.69	+0.2
93,017	-		IAI46_00405	0.69	-0.7
93,017	-		IAI46_00405	0.69	-0.2
93,025	+		IAI46_00405	0.69	-0.1
93,083	+		IAI46_00405	0.74	+0.1
93,083	+		IAI46_00405	0.74	+1.0
93,083	+		IAI46_00405	0.74	+0.4
93,083	+		IAI46_00405	0.74	+0.0
93,084	-		IAI46_00405	0.74	-0.3
93,101	+		IAI46_00405	0.75	-1.6
93,102	-		IAI46_00405	0.75	-0.2
93,178	+		IAI46_00405	0.80	+0.8
93,178	+		IAI46_00405	0.80	+0.1
93,178	+		IAI46_00405	0.80	-0.5
93,179	-		IAI46_00405	0.80	+0.0
93,191	+		IAI46_00405	0.81	+1.3
93,203	+		IAI46_00405	0.82	-0.4
93,204	-		IAI46_00405	0.82	-0.7
93,305	-		IAI46_00405	0.89	+0.0
93,305	-		IAI46_00405	0.89	+1.2
93,327	-				+0.2
93,327	-				+0.3
93,334	+				-0.3
93,335	-				+0.1
93,398	+				+0.1
93,398	+				-0.1
93,459	+				-0.4
93,459	+				+0.7
93,498	+				+0.0
93,498	+				-0.2
93,498	+				-0.1
93,499	-				+0.7
93,499	-				-0.7
93,502	+				+0.9
93,503	-				+0.7
93,564	+				-0.2
93,576	+				-0.8
93,577	-				-0.1
93,577	-				+0.9
93,579	-				-0.0
93,581	+				-0.4
93,589	+				-0.3
93,597	-				+0.6
93,597	-				+0.6
93,608	+				-0.0
93,623	+				+0.5
93,624	-				+0.8
93,795	+		IAI46_00410	0.15	-0.8
93,795	+		IAI46_00410	0.15	-0.1
93,796	-		IAI46_00410	0.15	+1.0
93,796	-		IAI46_00410	0.15	-0.2
93,806	-		IAI46_00410	0.16	+1.3
93,824	-		IAI46_00410	0.17	-0.2
93,824	-		IAI46_00410	0.17	-0.4
93,824	-		IAI46_00410	0.17	-0.3
93,841	+		IAI46_00410	0.18	-0.0
93,842	-		IAI46_00410	0.19	+0.8
93,843	+		IAI46_00410	0.19	+0.4
93,843	+		IAI46_00410	0.19	+0.5
93,843	+		IAI46_00410	0.19	-0.1
93,844	-		IAI46_00410	0.19	+0.0
93,844	-		IAI46_00410	0.19	-0.0
93,865	+		IAI46_00410	0.20	+0.2
93,865	+		IAI46_00410	0.20	-0.1
93,865	+		IAI46_00410	0.20	+0.4
93,866	-		IAI46_00410	0.20	-0.1
93,866	-		IAI46_00410	0.20	+0.5
93,866	-		IAI46_00410	0.20	+0.4
93,866	-		IAI46_00410	0.20	-0.3
93,866	-		IAI46_00410	0.20	+0.6
93,868	-		IAI46_00410	0.20	-0.1
93,868	-		IAI46_00410	0.20	-0.5
93,945	+		IAI46_00410	0.26	-0.7
93,966	+		IAI46_00410	0.27	+0.4
93,966	+		IAI46_00410	0.27	+0.1
93,967	-		IAI46_00410	0.28	+0.2
94,006	-		IAI46_00410	0.30	-0.0
94,213	+		IAI46_00410	0.45	-0.7
94,213	+		IAI46_00410	0.45	+0.0
94,213	+		IAI46_00410	0.45	+1.4
94,214	-		IAI46_00410	0.45	-0.7
94,214	-		IAI46_00410	0.45	+0.2
94,214	-		IAI46_00410	0.45	+0.6
94,214	-		IAI46_00410	0.45	-0.7
94,215	+		IAI46_00410	0.45	-0.9
94,216	-		IAI46_00410	0.45	+0.8
94,240	-		IAI46_00410	0.47	-0.0
94,240	-		IAI46_00410	0.47	+0.5
94,253	-		IAI46_00410	0.48	+1.1
94,253	-		IAI46_00410	0.48	-0.5
94,353	+		IAI46_00410	0.55	-0.2
94,353	+		IAI46_00410	0.55	-0.3
94,353	+		IAI46_00410	0.55	+0.6
94,354	-		IAI46_00410	0.55	-0.5
94,420	+		IAI46_00410	0.60	+1.7
94,422	+		IAI46_00410	0.60	-1.9
94,423	-		IAI46_00410	0.60	+0.3
94,465	+		IAI46_00410	0.63	-0.8
94,465	+		IAI46_00410	0.63	+1.2
94,552	-		IAI46_00410	0.69	+0.1
94,562	+		IAI46_00410	0.70	-0.2
94,563	-		IAI46_00410	0.70	-0.6
94,563	-		IAI46_00410	0.70	-1.0
94,606	+		IAI46_00410	0.73	+0.8
94,607	-		IAI46_00410	0.73	-0.1
94,607	-		IAI46_00410	0.73	+0.2
94,639	+		IAI46_00410	0.76	-0.0
94,639	+		IAI46_00410	0.76	+0.1
94,639	+		IAI46_00410	0.76	+0.5
94,639	+		IAI46_00410	0.76	-0.0
94,640	-		IAI46_00410	0.76	-0.2
94,640	-		IAI46_00410	0.76	-0.3
94,640	-		IAI46_00410	0.76	+0.2
94,640	-		IAI46_00410	0.76	-0.1
94,640	-		IAI46_00410	0.76	+1.4
94,641	+		IAI46_00410	0.76	+0.3
94,641	+		IAI46_00410	0.76	+1.2
94,642	-		IAI46_00410	0.76	+1.1
94,648	+		IAI46_00410	0.76	-0.0
94,649	-		IAI46_00410	0.76	+0.2
94,766	-		IAI46_00410	0.85	-0.0
94,795	+		IAI46_00410	0.87	+0.1
94,796	-		IAI46_00410	0.87	-0.2
94,796	-		IAI46_00410	0.87	+0.2
94,849	+				+0.2
94,895	+				+0.0
94,896	-				-0.2
94,900	+				-0.2
94,901	-				+0.7
94,901	-				+1.1
94,922	+				-0.4
94,922	+				+0.3
94,923	-				-0.3
94,923	-				+0.3
94,964	+				-0.5
95,044	-		IAI46_00415	0.10	-0.0
95,044	-		IAI46_00415	0.10	+1.0
95,085	+		IAI46_00415	0.17	+0.7
95,085	+		IAI46_00415	0.17	+0.6
95,085	+		IAI46_00415	0.17	-0.3
95,086	-		IAI46_00415	0.17	-0.3
95,086	-		IAI46_00415	0.17	-1.2
95,086	-		IAI46_00415	0.17	-0.4
95,159	+		IAI46_00415	0.30	+0.4
95,160	-		IAI46_00415	0.30	+0.5
95,160	-		IAI46_00415	0.30	+0.0
95,563	+				-0.7
95,563	+				+0.1
95,563	+				+0.4
95,563	+				-0.4
95,563	+				-0.2
95,564	-				+0.8
95,564	-				-0.1
95,581	-				-0.5
95,626	+				-0.5
95,627	-				-0.5
95,627	-				-1.7
95,636	-				+0.9
95,640	+				+0.7
95,769	-		IAI46_00420	0.16	-0.2
95,798	+		IAI46_00420	0.23	+0.0
95,798	+		IAI46_00420	0.23	-0.1
95,831	+		IAI46_00420	0.30	-0.1
95,832	-		IAI46_00420	0.30	+1.0
95,840	+		IAI46_00420	0.32	+0.4
95,860	-		IAI46_00420	0.36	+0.5
95,860	-		IAI46_00420	0.36	+1.6