Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00340 and IAI46_00345 are separated by 63 nucleotides IAI46_00345 and IAI46_00350 are separated by 144 nucleotides IAI46_00350 and IAI46_00355 are separated by 36 nucleotides IAI46_00355 and IAI46_00360 are separated by 104 nucleotides
IAI46_00340: IAI46_00340 - LuxR family transcriptional regulator, at 78,433 to 79,170
_00340
IAI46_00345: IAI46_00345 - histidine phosphatase family protein, at 79,234 to 79,821
_00345
IAI46_00350: IAI46_00350 - DUF4282 domain-containing protein, at 79,966 to 80,202
_00350
IAI46_00355: IAI46_00355 - HIT family protein, at 80,239 to 80,661
_00355
IAI46_00360: IAI46_00360 - LacI family DNA-binding transcriptional regulator, at 80,766 to 81,803
_00360
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 78.276 kb on - strand at 78.326 kb on - strand at 78.326 kb on - strand at 78.327 kb on + strand at 78.328 kb on - strand at 78.328 kb on - strand at 78.355 kb on + strand at 78.359 kb on + strand at 78.359 kb on + strand at 78.359 kb on + strand at 78.360 kb on - strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.370 kb on + strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.371 kb on - strand at 78.432 kb on + strand at 78.433 kb on - strand at 78.486 kb on + strand at 78.503 kb on + strand at 78.523 kb on + strand, within IAI46_00340 at 78.523 kb on + strand, within IAI46_00340 at 78.524 kb on - strand, within IAI46_00340 at 78.524 kb on - strand, within IAI46_00340 at 78.529 kb on + strand, within IAI46_00340 at 78.530 kb on - strand, within IAI46_00340 at 78.530 kb on - strand, within IAI46_00340 at 78.530 kb on - strand, within IAI46_00340 at 78.530 kb on - strand, within IAI46_00340 at 78.638 kb on + strand, within IAI46_00340 at 78.638 kb on + strand, within IAI46_00340 at 78.639 kb on - strand, within IAI46_00340 at 78.687 kb on + strand, within IAI46_00340 at 78.705 kb on + strand, within IAI46_00340 at 78.736 kb on - strand, within IAI46_00340 at 78.741 kb on + strand, within IAI46_00340 at 78.788 kb on + strand, within IAI46_00340 at 78.788 kb on + strand, within IAI46_00340 at 78.791 kb on + strand, within IAI46_00340 at 78.791 kb on + strand, within IAI46_00340 at 78.791 kb on + strand, within IAI46_00340 at 78.791 kb on + strand, within IAI46_00340 at 78.791 kb on + strand, within IAI46_00340 at 78.792 kb on - strand, within IAI46_00340 at 78.792 kb on - strand, within IAI46_00340 at 78.792 kb on - strand, within IAI46_00340 at 78.802 kb on - strand, within IAI46_00340 at 78.803 kb on + strand, within IAI46_00340 at 78.803 kb on + strand, within IAI46_00340 at 78.804 kb on - strand, within IAI46_00340 at 78.870 kb on - strand, within IAI46_00340 at 78.883 kb on - strand, within IAI46_00340 at 78.896 kb on - strand, within IAI46_00340 at 78.988 kb on + strand, within IAI46_00340 at 78.989 kb on - strand, within IAI46_00340 at 79.074 kb on + strand, within IAI46_00340 at 79.074 kb on + strand, within IAI46_00340 at 79.074 kb on + strand, within IAI46_00340 at 79.075 kb on - strand, within IAI46_00340 at 79.075 kb on - strand, within IAI46_00340 at 79.075 kb on - strand, within IAI46_00340 at 79.075 kb on - strand, within IAI46_00340 at 79.075 kb on - strand, within IAI46_00340 at 79.075 kb on - strand, within IAI46_00340 at 79.083 kb on + strand, within IAI46_00340 at 79.084 kb on - strand, within IAI46_00340 at 79.099 kb on - strand at 79.140 kb on + strand at 79.140 kb on + strand at 79.141 kb on - strand at 79.141 kb on - strand at 79.143 kb on + strand at 79.144 kb on - strand at 79.168 kb on + strand at 79.227 kb on + strand at 79.227 kb on + strand at 79.227 kb on + strand at 79.227 kb on + strand at 79.232 kb on + strand at 79.232 kb on + strand at 79.232 kb on + strand at 79.233 kb on - strand at 79.233 kb on - strand at 79.233 kb on - strand at 79.233 kb on - strand at 79.233 kb on - strand at 79.233 kb on - strand at 79.461 kb on + strand, within IAI46_00345 at 79.461 kb on + strand, within IAI46_00345 at 79.461 kb on + strand, within IAI46_00345 at 79.462 kb on - strand, within IAI46_00345 at 79.462 kb on - strand, within IAI46_00345 at 79.538 kb on - strand, within IAI46_00345 at 79.551 kb on + strand, within IAI46_00345 at 79.551 kb on + strand, within IAI46_00345 at 79.552 kb on - strand, within IAI46_00345 at 79.552 kb on - strand, within IAI46_00345 at 79.587 kb on + strand, within IAI46_00345 at 79.642 kb on + strand, within IAI46_00345 at 79.832 kb on + strand at 79.832 kb on + strand at 79.833 kb on - strand at 79.833 kb on - strand at 79.833 kb on - strand at 79.836 kb on + strand at 79.836 kb on + strand at 79.836 kb on + strand at 79.836 kb on + strand at 79.837 kb on - strand at 79.837 kb on - strand at 79.837 kb on - strand at 79.880 kb on + strand at 79.881 kb on - strand at 79.885 kb on + strand at 79.885 kb on + strand at 79.885 kb on + strand at 79.885 kb on + strand at 79.885 kb on + strand at 79.885 kb on + strand at 79.938 kb on + strand at 79.939 kb on - strand at 79.939 kb on - strand at 79.942 kb on + strand at 79.950 kb on + strand at 79.951 kb on - strand at 79.962 kb on + strand at 79.962 kb on + strand at 80.023 kb on + strand, within IAI46_00350 at 80.200 kb on + strand at 80.205 kb on - strand at 80.205 kb on - strand at 80.205 kb on - strand at 80.205 kb on - strand at 80.205 kb on - strand at 80.209 kb on - strand at 80.366 kb on + strand, within IAI46_00355 at 80.367 kb on - strand, within IAI46_00355 at 80.379 kb on + strand, within IAI46_00355 at 80.379 kb on + strand, within IAI46_00355 at 80.379 kb on + strand, within IAI46_00355 at 80.379 kb on + strand, within IAI46_00355 at 80.380 kb on - strand, within IAI46_00355 at 80.380 kb on - strand, within IAI46_00355 at 80.380 kb on - strand, within IAI46_00355 at 80.380 kb on - strand, within IAI46_00355 at 80.452 kb on + strand, within IAI46_00355 at 80.453 kb on - strand, within IAI46_00355 at 80.640 kb on - strand at 80.732 kb on - strand at 80.767 kb on + strand at 80.768 kb on - strand at 80.768 kb on - strand at 80.768 kb on - strand at 80.774 kb on + strand at 80.775 kb on - strand at 80.775 kb on - strand at 80.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 78,276 - +0.1 78,326 - -0.6 78,326 - +0.9 78,327 + +0.7 78,328 - -0.4 78,328 - +0.4 78,355 + -0.5 78,359 + +0.5 78,359 + -1.1 78,359 + -1.2 78,360 - -0.2 78,370 + +0.8 78,370 + +0.1 78,370 + +0.4 78,370 + +0.3 78,370 + +0.6 78,370 + -0.4 78,370 + +0.1 78,370 + +1.0 78,371 - +0.2 78,371 - +0.5 78,371 - +0.7 78,371 - +0.2 78,371 - +0.5 78,432 + -0.4 78,433 - -0.2 78,486 + +0.6 78,503 + +0.6 78,523 + IAI46_00340 0.12 -0.5 78,523 + IAI46_00340 0.12 +0.6 78,524 - IAI46_00340 0.12 -0.8 78,524 - IAI46_00340 0.12 -0.2 78,529 + IAI46_00340 0.13 -0.2 78,530 - IAI46_00340 0.13 -0.3 78,530 - IAI46_00340 0.13 +0.2 78,530 - IAI46_00340 0.13 +1.4 78,530 - IAI46_00340 0.13 -0.3 78,638 + IAI46_00340 0.28 +0.5 78,638 + IAI46_00340 0.28 -0.2 78,639 - IAI46_00340 0.28 -0.3 78,687 + IAI46_00340 0.34 -0.4 78,705 + IAI46_00340 0.37 -0.0 78,736 - IAI46_00340 0.41 -1.1 78,741 + IAI46_00340 0.42 -0.4 78,788 + IAI46_00340 0.48 -0.1 78,788 + IAI46_00340 0.48 +0.1 78,791 + IAI46_00340 0.49 +1.1 78,791 + IAI46_00340 0.49 -0.1 78,791 + IAI46_00340 0.49 +0.5 78,791 + IAI46_00340 0.49 +0.6 78,791 + IAI46_00340 0.49 -0.0 78,792 - IAI46_00340 0.49 +0.7 78,792 - IAI46_00340 0.49 +1.0 78,792 - IAI46_00340 0.49 +0.7 78,802 - IAI46_00340 0.50 -0.5 78,803 + IAI46_00340 0.50 -0.4 78,803 + IAI46_00340 0.50 +0.1 78,804 - IAI46_00340 0.50 +0.6 78,870 - IAI46_00340 0.59 -0.7 78,883 - IAI46_00340 0.61 -0.0 78,896 - IAI46_00340 0.63 +0.7 78,988 + IAI46_00340 0.75 +0.2 78,989 - IAI46_00340 0.75 -0.5 79,074 + IAI46_00340 0.87 +0.3 79,074 + IAI46_00340 0.87 +0.6 79,074 + IAI46_00340 0.87 -0.1 79,075 - IAI46_00340 0.87 +0.6 79,075 - IAI46_00340 0.87 -0.6 79,075 - IAI46_00340 0.87 +0.2 79,075 - IAI46_00340 0.87 +0.1 79,075 - IAI46_00340 0.87 +0.2 79,075 - IAI46_00340 0.87 +0.8 79,083 + IAI46_00340 0.88 -0.9 79,084 - IAI46_00340 0.88 -0.1 79,099 - +1.2 79,140 + +0.1 79,140 + -0.2 79,141 - +0.4 79,141 - +1.1 79,143 + -1.1 79,144 - +0.1 79,168 + -0.1 79,227 + -0.6 79,227 + -0.5 79,227 + -0.4 79,227 + -0.2 79,232 + +0.1 79,232 + +0.4 79,232 + -0.1 79,233 - -0.3 79,233 - +1.1 79,233 - +0.7 79,233 - -0.1 79,233 - +0.6 79,233 - -2.1 79,461 + IAI46_00345 0.39 -0.9 79,461 + IAI46_00345 0.39 +0.2 79,461 + IAI46_00345 0.39 -0.0 79,462 - IAI46_00345 0.39 +0.4 79,462 - IAI46_00345 0.39 -0.4 79,538 - IAI46_00345 0.52 +0.2 79,551 + IAI46_00345 0.54 +0.3 79,551 + IAI46_00345 0.54 +0.3 79,552 - IAI46_00345 0.54 -0.0 79,552 - IAI46_00345 0.54 +0.0 79,587 + IAI46_00345 0.60 +0.1 79,642 + IAI46_00345 0.69 +0.7 79,832 + +0.3 79,832 + -0.7 79,833 - -0.0 79,833 - +0.2 79,833 - +0.2 79,836 + +0.6 79,836 + -0.3 79,836 + +0.8 79,836 + +1.0 79,837 - -0.8 79,837 - -0.2 79,837 - +0.3 79,880 + +0.1 79,881 - +0.6 79,885 + -0.8 79,885 + +0.4 79,885 + -0.3 79,885 + +0.1 79,885 + -0.8 79,885 + -0.3 79,938 + +0.4 79,939 - -0.6 79,939 - +0.5 79,942 + +0.6 79,950 + -0.3 79,951 - -0.4 79,962 + +0.2 79,962 + -1.0 80,023 + IAI46_00350 0.24 +0.7 80,200 + +0.4 80,205 - +0.6 80,205 - +0.6 80,205 - -0.4 80,205 - +0.1 80,205 - -0.9 80,209 - -0.1 80,366 + IAI46_00355 0.30 +0.3 80,367 - IAI46_00355 0.30 -1.0 80,379 + IAI46_00355 0.33 +0.0 80,379 + IAI46_00355 0.33 -0.2 80,379 + IAI46_00355 0.33 -0.0 80,379 + IAI46_00355 0.33 +0.3 80,380 - IAI46_00355 0.33 -0.2 80,380 - IAI46_00355 0.33 +0.5 80,380 - IAI46_00355 0.33 -1.6 80,380 - IAI46_00355 0.33 +0.3 80,452 + IAI46_00355 0.50 -0.4 80,453 - IAI46_00355 0.51 -0.6 80,640 - +0.4 80,732 - +1.1 80,767 + -0.1 80,768 - +0.2 80,768 - +0.5 80,768 - +0.3 80,774 + +0.1 80,775 - -1.4 80,775 - -0.8 80,802 - +0.2
Or see this region's nucleotide sequence