Strain Fitness in Serratia liquefaciens MT49 around IAI46_00225

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00215 and IAI46_00220 overlap by 4 nucleotidesIAI46_00220 and IAI46_00225 overlap by 1 nucleotidesIAI46_00225 and IAI46_00230 are separated by 228 nucleotidesIAI46_00230 and IAI46_00235 are separated by 33 nucleotides IAI46_00215: IAI46_00215 - formate dehydrogenase subunit beta, at 50,164 to 51,063 _00215 IAI46_00220: IAI46_00220 - formate dehydrogenase cytochrome b556 subunit, at 51,060 to 51,695 _00220 IAI46_00225: IAI46_00225 - formate dehydrogenase accessory protein FdhE, at 51,695 to 52,624 _00225 IAI46_00230: IAI46_00230 - DcrB-related protein, at 52,853 to 53,500 _00230 IAI46_00235: IAI46_00235 - glutathione S-transferase, at 53,534 to 54,139 _00235 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.786 kb on - strand, within IAI46_00215at 50.804 kb on - strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.835 kb on + strand, within IAI46_00215at 50.836 kb on - strand, within IAI46_00215at 50.836 kb on - strand, within IAI46_00215at 50.836 kb on - strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.839 kb on + strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.840 kb on - strand, within IAI46_00215at 50.872 kb on + strand, within IAI46_00215at 50.872 kb on + strand, within IAI46_00215at 50.873 kb on - strand, within IAI46_00215at 50.982 kb on - strandat 50.982 kb on - strandat 50.989 kb on + strandat 50.989 kb on + strandat 51.077 kb on + strandat 51.248 kb on + strand, within IAI46_00220at 51.249 kb on - strand, within IAI46_00220at 51.249 kb on - strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.293 kb on + strand, within IAI46_00220at 51.294 kb on - strand, within IAI46_00220at 51.338 kb on + strand, within IAI46_00220at 51.339 kb on - strand, within IAI46_00220at 51.339 kb on - strand, within IAI46_00220at 51.380 kb on + strand, within IAI46_00220at 51.465 kb on + strand, within IAI46_00220at 51.465 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.551 kb on + strand, within IAI46_00220at 51.564 kb on + strand, within IAI46_00220at 51.565 kb on - strand, within IAI46_00220at 51.565 kb on - strand, within IAI46_00220at 51.565 kb on - strand, within IAI46_00220at 51.581 kb on - strand, within IAI46_00220at 51.581 kb on - strand, within IAI46_00220at 51.716 kb on - strandat 51.716 kb on - strandat 51.726 kb on + strandat 51.827 kb on - strand, within IAI46_00225at 51.827 kb on - strand, within IAI46_00225at 51.857 kb on + strand, within IAI46_00225at 51.858 kb on - strand, within IAI46_00225at 51.932 kb on - strand, within IAI46_00225at 51.932 kb on - strand, within IAI46_00225at 52.199 kb on + strand, within IAI46_00225at 52.199 kb on + strand, within IAI46_00225at 52.200 kb on - strand, within IAI46_00225at 52.247 kb on + strand, within IAI46_00225at 52.310 kb on - strand, within IAI46_00225at 52.335 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.388 kb on - strand, within IAI46_00225at 52.418 kb on + strand, within IAI46_00225at 52.419 kb on - strand, within IAI46_00225at 52.481 kb on + strand, within IAI46_00225at 52.481 kb on + strand, within IAI46_00225at 52.481 kb on + strand, within IAI46_00225at 52.482 kb on - strand, within IAI46_00225at 52.651 kb on + strandat 52.652 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.682 kb on - strandat 52.691 kb on - strandat 52.691 kb on - strandat 52.747 kb on + strandat 52.748 kb on - strandat 52.755 kb on + strandat 52.755 kb on + strandat 52.760 kb on - strandat 52.760 kb on - strandat 52.807 kb on + strandat 52.807 kb on + strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.808 kb on - strandat 52.813 kb on + strandat 52.930 kb on + strand, within IAI46_00230at 53.221 kb on + strand, within IAI46_00230at 53.222 kb on - strand, within IAI46_00230at 53.273 kb on + strand, within IAI46_00230at 53.281 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.370 kb on + strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.371 kb on - strand, within IAI46_00230at 53.377 kb on + strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.378 kb on - strand, within IAI46_00230at 53.498 kb on + strandat 53.498 kb on + strandat 53.542 kb on + strandat 53.543 kb on - strandat 53.543 kb on - strandat 53.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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50,786 - IAI46_00215 0.69 +0.3
50,804 - IAI46_00215 0.71 +0.1
50,835 + IAI46_00215 0.75 +1.5
50,835 + IAI46_00215 0.75 -0.4
50,835 + IAI46_00215 0.75 -1.1
50,835 + IAI46_00215 0.75 -0.0
50,835 + IAI46_00215 0.75 -0.6
50,835 + IAI46_00215 0.75 -0.1
50,836 - IAI46_00215 0.75 +1.0
50,836 - IAI46_00215 0.75 +2.7
50,836 - IAI46_00215 0.75 +0.9
50,839 + IAI46_00215 0.75 +1.2
50,839 + IAI46_00215 0.75 +1.1
50,839 + IAI46_00215 0.75 -0.5
50,839 + IAI46_00215 0.75 -0.2
50,839 + IAI46_00215 0.75 -0.7
50,839 + IAI46_00215 0.75 +0.4
50,839 + IAI46_00215 0.75 -0.1
50,840 - IAI46_00215 0.75 +0.1
50,840 - IAI46_00215 0.75 -0.5
50,840 - IAI46_00215 0.75 -1.1
50,840 - IAI46_00215 0.75 -0.1
50,840 - IAI46_00215 0.75 +0.9
50,872 + IAI46_00215 0.79 +0.1
50,872 + IAI46_00215 0.79 -0.8
50,873 - IAI46_00215 0.79 +0.7
50,982 - -2.0
50,982 - -0.3
50,989 + -0.2
50,989 + -0.3
51,077 + +0.4
51,248 + IAI46_00220 0.30 -0.0
51,249 - IAI46_00220 0.30 -0.4
51,249 - IAI46_00220 0.30 +0.0
51,293 + IAI46_00220 0.37 -0.1
51,293 + IAI46_00220 0.37 +0.2
51,293 + IAI46_00220 0.37 -0.2
51,293 + IAI46_00220 0.37 -0.2
51,294 - IAI46_00220 0.37 +0.8
51,338 + IAI46_00220 0.44 +0.6
51,339 - IAI46_00220 0.44 -0.1
51,339 - IAI46_00220 0.44 -0.5
51,380 + IAI46_00220 0.50 +0.8
51,465 + IAI46_00220 0.64 +0.2
51,465 + IAI46_00220 0.64 +0.6
51,551 + IAI46_00220 0.77 -0.3
51,551 + IAI46_00220 0.77 -0.4
51,551 + IAI46_00220 0.77 +0.4
51,551 + IAI46_00220 0.77 +0.6
51,551 + IAI46_00220 0.77 +0.5
51,564 + IAI46_00220 0.79 +0.8
51,565 - IAI46_00220 0.79 -0.1
51,565 - IAI46_00220 0.79 +0.8
51,565 - IAI46_00220 0.79 +0.8
51,581 - IAI46_00220 0.82 -0.2
51,581 - IAI46_00220 0.82 -0.5
51,716 - +0.9
51,716 - +0.7
51,726 + -0.1
51,827 - IAI46_00225 0.14 -0.3
51,827 - IAI46_00225 0.14 -0.0
51,857 + IAI46_00225 0.17 -0.3
51,858 - IAI46_00225 0.18 -0.5
51,932 - IAI46_00225 0.25 +0.8
51,932 - IAI46_00225 0.25 +0.5
52,199 + IAI46_00225 0.54 +0.3
52,199 + IAI46_00225 0.54 -0.4
52,200 - IAI46_00225 0.54 +1.4
52,247 + IAI46_00225 0.59 -0.2
52,310 - IAI46_00225 0.66 +0.1
52,335 - IAI46_00225 0.69 +0.0
52,388 - IAI46_00225 0.75 +0.2
52,388 - IAI46_00225 0.75 -0.4
52,388 - IAI46_00225 0.75 -1.2
52,388 - IAI46_00225 0.75 -1.2
52,388 - IAI46_00225 0.75 +0.5
52,418 + IAI46_00225 0.78 -0.4
52,419 - IAI46_00225 0.78 -0.6
52,481 + IAI46_00225 0.85 +0.4
52,481 + IAI46_00225 0.85 -0.3
52,481 + IAI46_00225 0.85 -0.2
52,482 - IAI46_00225 0.85 +0.4
52,651 + +0.2
52,652 - -0.1
52,682 - -0.7
52,682 - +1.4
52,682 - -0.6
52,682 - +0.4
52,682 - +0.4
52,691 - +0.1
52,691 - -0.2
52,747 + -0.1
52,748 - +0.4
52,755 + -0.2
52,755 + +0.2
52,760 - -0.2
52,760 - +0.1
52,807 + -0.1
52,807 + +0.5
52,808 - -0.8
52,808 - -1.4
52,808 - +0.4
52,808 - -0.6
52,813 + -0.4
52,930 + IAI46_00230 0.12 +0.5
53,221 + IAI46_00230 0.57 +0.2
53,222 - IAI46_00230 0.57 +0.8
53,273 + IAI46_00230 0.65 +0.5
53,281 + IAI46_00230 0.66 +0.5
53,370 + IAI46_00230 0.80 -0.0
53,370 + IAI46_00230 0.80 -0.1
53,370 + IAI46_00230 0.80 +0.7
53,371 - IAI46_00230 0.80 +0.0
53,371 - IAI46_00230 0.80 +0.2
53,371 - IAI46_00230 0.80 +0.9
53,371 - IAI46_00230 0.80 -0.3
53,371 - IAI46_00230 0.80 -0.1
53,371 - IAI46_00230 0.80 -0.3
53,377 + IAI46_00230 0.81 +0.2
53,378 - IAI46_00230 0.81 -0.5
53,378 - IAI46_00230 0.81 +0.8
53,378 - IAI46_00230 0.81 -2.0
53,378 - IAI46_00230 0.81 -0.5
53,378 - IAI46_00230 0.81 -1.1
53,378 - IAI46_00230 0.81 +0.9
53,498 + +0.1
53,498 + +0.5
53,542 + +0.5
53,543 - +0.0
53,543 - -1.6
53,553 - -0.6

Or see this region's nucleotide sequence