Strain Fitness in Serratia liquefaciens MT49 around IAI46_00200

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00195 and IAI46_00200 are separated by 124 nucleotidesIAI46_00200 and IAI46_00205 are separated by 110 nucleotides IAI46_00195: IAI46_00195 - methyl-accepting chemotaxis protein, at 43,329 to 45,257 _00195 IAI46_00200: IAI46_00200 - superoxide dismutase [Mn], at 45,382 to 46,002 _00200 IAI46_00205: IAI46_00205 - formate dehydrogenase accessory sulfurtransferase FdhD, at 46,113 to 46,958 _00205 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 44.425 kb on - strand, within IAI46_00195at 44.456 kb on + strand, within IAI46_00195at 44.457 kb on - strand, within IAI46_00195at 44.457 kb on - strand, within IAI46_00195at 44.542 kb on + strand, within IAI46_00195at 44.542 kb on + strand, within IAI46_00195at 44.543 kb on - strand, within IAI46_00195at 44.543 kb on - strand, within IAI46_00195at 44.552 kb on + strand, within IAI46_00195at 44.563 kb on + strand, within IAI46_00195at 44.563 kb on + strand, within IAI46_00195at 44.564 kb on - strand, within IAI46_00195at 44.564 kb on - strand, within IAI46_00195at 44.658 kb on + strand, within IAI46_00195at 44.783 kb on + strand, within IAI46_00195at 44.783 kb on + strand, within IAI46_00195at 44.783 kb on + strand, within IAI46_00195at 44.783 kb on + strand, within IAI46_00195at 44.796 kb on + strand, within IAI46_00195at 44.797 kb on - strand, within IAI46_00195at 44.897 kb on - strand, within IAI46_00195at 45.019 kb on + strand, within IAI46_00195at 45.029 kb on + strand, within IAI46_00195at 45.029 kb on + strand, within IAI46_00195at 45.030 kb on - strand, within IAI46_00195at 45.030 kb on - strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.031 kb on + strand, within IAI46_00195at 45.032 kb on - strand, within IAI46_00195at 45.032 kb on - strand, within IAI46_00195at 45.058 kb on + strand, within IAI46_00195at 45.058 kb on + strand, within IAI46_00195at 45.058 kb on + strand, within IAI46_00195at 45.058 kb on + strand, within IAI46_00195at 45.128 kb on + strandat 45.128 kb on + strandat 45.129 kb on - strandat 45.129 kb on - strandat 45.129 kb on - strandat 45.129 kb on - strandat 45.136 kb on + strandat 45.136 kb on + strandat 45.136 kb on + strandat 45.137 kb on - strandat 45.137 kb on - strandat 45.137 kb on - strandat 45.137 kb on - strandat 45.172 kb on - strandat 45.315 kb on - strandat 45.370 kb on - strandat 45.383 kb on + strandat 45.574 kb on - strand, within IAI46_00200at 45.574 kb on - strand, within IAI46_00200at 46.003 kb on - strandat 46.024 kb on - strandat 46.024 kb on - strandat 46.024 kb on - strandat 46.053 kb on + strandat 46.054 kb on - strandat 46.070 kb on - strandat 46.070 kb on - strandat 46.070 kb on - strandat 46.070 kb on - strandat 46.071 kb on + strandat 46.071 kb on + strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.072 kb on - strandat 46.114 kb on + strandat 46.127 kb on + strandat 46.127 kb on + strandat 46.127 kb on + strandat 46.128 kb on - strandat 46.157 kb on + strandat 46.158 kb on - strandat 46.300 kb on + strand, within IAI46_00205at 46.320 kb on + strand, within IAI46_00205at 46.321 kb on - strand, within IAI46_00205at 46.324 kb on - strand, within IAI46_00205at 46.356 kb on + strand, within IAI46_00205at 46.413 kb on + strand, within IAI46_00205at 46.413 kb on + strand, within IAI46_00205at 46.414 kb on - strand, within IAI46_00205at 46.414 kb on - strand, within IAI46_00205at 46.414 kb on - strand, within IAI46_00205at 46.431 kb on + strand, within IAI46_00205at 46.431 kb on + strand, within IAI46_00205at 46.432 kb on - strand, within IAI46_00205at 46.480 kb on - strand, within IAI46_00205at 46.514 kb on + strand, within IAI46_00205at 46.584 kb on - strand, within IAI46_00205at 46.590 kb on + strand, within IAI46_00205at 46.591 kb on - strand, within IAI46_00205at 46.665 kb on + strand, within IAI46_00205at 46.665 kb on + strand, within IAI46_00205at 46.666 kb on - strand, within IAI46_00205at 46.666 kb on - strand, within IAI46_00205at 46.685 kb on + strand, within IAI46_00205at 46.697 kb on + strand, within IAI46_00205at 46.705 kb on - strand, within IAI46_00205at 46.705 kb on - strand, within IAI46_00205at 46.705 kb on - strand, within IAI46_00205at 46.706 kb on + strand, within IAI46_00205at 46.706 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.711 kb on + strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.712 kb on - strand, within IAI46_00205at 46.817 kb on + strand, within IAI46_00205at 46.819 kb on + strand, within IAI46_00205at 46.819 kb on + strand, within IAI46_00205at 46.819 kb on + strand, within IAI46_00205at 46.888 kb on + strandat 46.889 kb on - strandat 46.929 kb on + strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.930 kb on - strandat 46.947 kb on + strandat 46.948 kb on - strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.950 kb on - strandat 46.950 kb on - strandat 46.950 kb on - strandat 46.950 kb on - strandat 46.960 kb on + strandat 46.960 kb on + strandat 46.988 kb on + strandat 46.988 kb on + strandat 46.988 kb on + strandat 46.989 kb on - strandat 46.989 kb on - strandat 46.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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44,425 - IAI46_00195 0.57 +0.4
44,456 + IAI46_00195 0.58 +0.0
44,457 - IAI46_00195 0.58 +0.3
44,457 - IAI46_00195 0.58 +0.4
44,542 + IAI46_00195 0.63 +0.4
44,542 + IAI46_00195 0.63 +0.0
44,543 - IAI46_00195 0.63 +0.4
44,543 - IAI46_00195 0.63 -0.1
44,552 + IAI46_00195 0.63 -0.3
44,563 + IAI46_00195 0.64 +0.0
44,563 + IAI46_00195 0.64 +0.6
44,564 - IAI46_00195 0.64 -0.7
44,564 - IAI46_00195 0.64 -0.0
44,658 + IAI46_00195 0.69 -0.6
44,783 + IAI46_00195 0.75 -0.5
44,783 + IAI46_00195 0.75 -0.1
44,783 + IAI46_00195 0.75 +0.1
44,783 + IAI46_00195 0.75 -0.1
44,796 + IAI46_00195 0.76 +0.5
44,797 - IAI46_00195 0.76 +0.1
44,897 - IAI46_00195 0.81 -0.1
45,019 + IAI46_00195 0.88 -0.5
45,029 + IAI46_00195 0.88 -0.1
45,029 + IAI46_00195 0.88 +0.5
45,030 - IAI46_00195 0.88 +0.3
45,030 - IAI46_00195 0.88 -0.1
45,031 + IAI46_00195 0.88 -1.2
45,031 + IAI46_00195 0.88 -1.6
45,031 + IAI46_00195 0.88 -0.8
45,031 + IAI46_00195 0.88 -0.3
45,031 + IAI46_00195 0.88 +0.2
45,031 + IAI46_00195 0.88 -0.2
45,031 + IAI46_00195 0.88 +0.9
45,032 - IAI46_00195 0.88 +0.6
45,032 - IAI46_00195 0.88 -1.3
45,058 + IAI46_00195 0.90 -0.7
45,058 + IAI46_00195 0.90 -0.7
45,058 + IAI46_00195 0.90 -1.3
45,058 + IAI46_00195 0.90 -0.3
45,128 + +0.7
45,128 + -0.1
45,129 - -1.2
45,129 - +0.9
45,129 - -1.0
45,129 - -0.5
45,136 + +1.7
45,136 + +0.2
45,136 + -0.9
45,137 - -0.0
45,137 - +1.2
45,137 - -0.0
45,137 - -0.1
45,172 - -0.8
45,315 - +0.5
45,370 - -0.2
45,383 + +0.2
45,574 - IAI46_00200 0.31 +1.0
45,574 - IAI46_00200 0.31 -0.8
46,003 - +1.4
46,024 - +0.1
46,024 - -0.5
46,024 - +0.2
46,053 + -1.8
46,054 - -1.1
46,070 - -0.8
46,070 - +0.3
46,070 - +1.2
46,070 - +0.4
46,071 + -0.7
46,071 + -0.8
46,072 - -0.8
46,072 - +1.4
46,072 - -0.2
46,072 - +0.6
46,072 - +0.8
46,114 + +0.4
46,127 + +0.9
46,127 + -0.0
46,127 + -1.5
46,128 - -0.7
46,157 + +0.8
46,158 - +0.3
46,300 + IAI46_00205 0.22 -0.9
46,320 + IAI46_00205 0.24 +0.7
46,321 - IAI46_00205 0.25 +0.2
46,324 - IAI46_00205 0.25 +0.5
46,356 + IAI46_00205 0.29 +0.1
46,413 + IAI46_00205 0.35 +0.7
46,413 + IAI46_00205 0.35 +0.1
46,414 - IAI46_00205 0.36 -0.3
46,414 - IAI46_00205 0.36 -0.3
46,414 - IAI46_00205 0.36 +0.0
46,431 + IAI46_00205 0.38 -0.3
46,431 + IAI46_00205 0.38 -0.5
46,432 - IAI46_00205 0.38 -0.9
46,480 - IAI46_00205 0.43 -0.1
46,514 + IAI46_00205 0.47 +0.7
46,584 - IAI46_00205 0.56 +0.6
46,590 + IAI46_00205 0.56 -0.6
46,591 - IAI46_00205 0.57 -0.2
46,665 + IAI46_00205 0.65 +0.5
46,665 + IAI46_00205 0.65 +1.1
46,666 - IAI46_00205 0.65 -1.7
46,666 - IAI46_00205 0.65 +0.1
46,685 + IAI46_00205 0.68 +0.2
46,697 + IAI46_00205 0.69 +0.5
46,705 - IAI46_00205 0.70 -0.4
46,705 - IAI46_00205 0.70 -0.5
46,705 - IAI46_00205 0.70 +0.0
46,706 + IAI46_00205 0.70 +1.4
46,706 + IAI46_00205 0.70 -0.2
46,711 + IAI46_00205 0.71 -0.1
46,711 + IAI46_00205 0.71 +0.1
46,711 + IAI46_00205 0.71 +1.0
46,711 + IAI46_00205 0.71 +0.4
46,711 + IAI46_00205 0.71 -0.2
46,712 - IAI46_00205 0.71 +0.4
46,712 - IAI46_00205 0.71 -0.4
46,712 - IAI46_00205 0.71 +0.5
46,712 - IAI46_00205 0.71 -0.1
46,712 - IAI46_00205 0.71 +0.5
46,712 - IAI46_00205 0.71 +0.4
46,817 + IAI46_00205 0.83 +0.2
46,819 + IAI46_00205 0.83 +0.6
46,819 + IAI46_00205 0.83 +0.2
46,819 + IAI46_00205 0.83 +0.1
46,888 + +0.2
46,889 - +0.1
46,929 + +0.0
46,930 - +0.3
46,930 - +0.6
46,930 - -1.3
46,930 - +0.3
46,930 - -0.4
46,930 - +0.5
46,947 + +0.0
46,948 - -0.6
46,949 + -0.1
46,949 + -1.1
46,949 + -0.0
46,949 + -0.0
46,950 - -0.1
46,950 - -0.3
46,950 - +0.7
46,950 - +0.0
46,960 + +0.4
46,960 + +0.6
46,988 + +0.1
46,988 + -0.0
46,988 + -0.1
46,989 - -0.3
46,989 - -0.6
46,989 - +2.1

Or see this region's nucleotide sequence