Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00175 and IAI46_00180 are separated by 71 nucleotides IAI46_00180 and IAI46_00185 are separated by 32 nucleotides IAI46_00185 and IAI46_00190 are separated by 113 nucleotides
IAI46_00175: IAI46_00175 - PLP-dependent aminotransferase family protein, at 39,740 to 41,206
_00175
IAI46_00180: IAI46_00180 - YibL family ribosome-associated protein, at 41,278 to 41,640
_00180
IAI46_00185: IAI46_00185 - class I SAM-dependent methyltransferase, at 41,673 to 42,452
_00185
IAI46_00190: IAI46_00190 - 6-N-hydroxylaminopurine resistance protein, at 42,566 to 43,237
_00190
Position (kb) 41
42 Strain fitness (log2 ratio) -1
0
1
2 at 40.348 kb on + strand, within IAI46_00175 at 40.377 kb on - strand, within IAI46_00175 at 40.534 kb on + strand, within IAI46_00175 at 40.534 kb on + strand, within IAI46_00175 at 40.534 kb on + strand, within IAI46_00175 at 40.534 kb on + strand, within IAI46_00175 at 40.535 kb on - strand, within IAI46_00175 at 40.535 kb on - strand, within IAI46_00175 at 40.535 kb on - strand, within IAI46_00175 at 40.535 kb on - strand, within IAI46_00175 at 40.613 kb on + strand, within IAI46_00175 at 40.699 kb on + strand, within IAI46_00175 at 40.700 kb on - strand, within IAI46_00175 at 40.880 kb on + strand, within IAI46_00175 at 40.881 kb on - strand, within IAI46_00175 at 41.004 kb on + strand, within IAI46_00175 at 41.060 kb on + strand at 41.061 kb on - strand at 41.061 kb on - strand at 41.061 kb on - strand at 41.061 kb on - strand at 41.061 kb on - strand at 41.083 kb on + strand at 41.084 kb on - strand at 41.084 kb on - strand at 41.084 kb on - strand at 41.116 kb on + strand at 41.126 kb on + strand at 41.127 kb on - strand at 41.225 kb on - strand at 41.245 kb on + strand at 41.289 kb on - strand at 41.304 kb on + strand at 41.304 kb on + strand at 41.304 kb on + strand at 41.304 kb on + strand at 41.305 kb on - strand at 41.305 kb on - strand at 41.441 kb on + strand, within IAI46_00180 at 41.441 kb on + strand, within IAI46_00180 at 41.442 kb on - strand, within IAI46_00180 at 41.442 kb on - strand, within IAI46_00180 at 41.442 kb on - strand, within IAI46_00180 at 41.442 kb on - strand, within IAI46_00180 at 41.442 kb on - strand, within IAI46_00180 at 41.442 kb on - strand, within IAI46_00180 at 41.564 kb on + strand, within IAI46_00180 at 41.564 kb on + strand, within IAI46_00180 at 41.564 kb on + strand, within IAI46_00180 at 41.564 kb on + strand, within IAI46_00180 at 41.565 kb on - strand, within IAI46_00180 at 41.692 kb on + strand at 41.692 kb on + strand at 41.692 kb on + strand at 41.692 kb on + strand at 41.692 kb on + strand at 41.693 kb on - strand at 41.813 kb on + strand, within IAI46_00185 at 41.837 kb on + strand, within IAI46_00185 at 41.840 kb on - strand, within IAI46_00185 at 41.876 kb on + strand, within IAI46_00185 at 41.876 kb on + strand, within IAI46_00185 at 41.876 kb on + strand, within IAI46_00185 at 41.876 kb on + strand, within IAI46_00185 at 41.877 kb on - strand, within IAI46_00185 at 41.877 kb on - strand, within IAI46_00185 at 41.877 kb on - strand, within IAI46_00185 at 41.877 kb on - strand, within IAI46_00185 at 41.877 kb on - strand, within IAI46_00185 at 41.880 kb on + strand, within IAI46_00185 at 41.880 kb on + strand, within IAI46_00185 at 41.881 kb on - strand, within IAI46_00185 at 41.881 kb on - strand, within IAI46_00185 at 41.881 kb on - strand, within IAI46_00185 at 41.881 kb on - strand, within IAI46_00185 at 41.881 kb on - strand, within IAI46_00185 at 41.941 kb on + strand, within IAI46_00185 at 41.941 kb on + strand, within IAI46_00185 at 41.991 kb on - strand, within IAI46_00185 at 42.004 kb on - strand, within IAI46_00185 at 42.020 kb on + strand, within IAI46_00185 at 42.020 kb on + strand, within IAI46_00185 at 42.020 kb on + strand, within IAI46_00185 at 42.021 kb on - strand, within IAI46_00185 at 42.364 kb on + strand, within IAI46_00185 at 42.385 kb on + strand at 42.385 kb on + strand at 42.386 kb on - strand at 42.452 kb on + strand at 42.452 kb on + strand at 42.452 kb on + strand at 42.453 kb on - strand at 42.453 kb on - strand at 42.453 kb on - strand at 42.500 kb on + strand at 42.500 kb on + strand at 42.501 kb on - strand at 42.501 kb on - strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.528 kb on + strand at 42.589 kb on + strand at 42.590 kb on - strand at 42.602 kb on - strand at 42.616 kb on + strand at 42.616 kb on + strand at 42.634 kb on + strand, within IAI46_00190 at 42.634 kb on + strand, within IAI46_00190
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 40,348 + IAI46_00175 0.41 -0.0 40,377 - IAI46_00175 0.43 -0.4 40,534 + IAI46_00175 0.54 -0.1 40,534 + IAI46_00175 0.54 -1.6 40,534 + IAI46_00175 0.54 +0.5 40,534 + IAI46_00175 0.54 +0.2 40,535 - IAI46_00175 0.54 -0.2 40,535 - IAI46_00175 0.54 +0.3 40,535 - IAI46_00175 0.54 +0.0 40,535 - IAI46_00175 0.54 -0.3 40,613 + IAI46_00175 0.60 -0.1 40,699 + IAI46_00175 0.65 -0.2 40,700 - IAI46_00175 0.65 +0.9 40,880 + IAI46_00175 0.78 +1.2 40,881 - IAI46_00175 0.78 +0.5 41,004 + IAI46_00175 0.86 -0.6 41,060 + +0.6 41,061 - +0.9 41,061 - +0.0 41,061 - +0.7 41,061 - -0.1 41,061 - +0.0 41,083 + -0.8 41,084 - -0.4 41,084 - +1.3 41,084 - -0.1 41,116 + +0.9 41,126 + -0.0 41,127 - +0.1 41,225 - +1.1 41,245 + +0.4 41,289 - -0.5 41,304 + -0.1 41,304 + -0.8 41,304 + -0.4 41,304 + -0.7 41,305 - +0.0 41,305 - +0.7 41,441 + IAI46_00180 0.45 +0.3 41,441 + IAI46_00180 0.45 +0.2 41,442 - IAI46_00180 0.45 +0.2 41,442 - IAI46_00180 0.45 +0.2 41,442 - IAI46_00180 0.45 +0.4 41,442 - IAI46_00180 0.45 +0.4 41,442 - IAI46_00180 0.45 -0.6 41,442 - IAI46_00180 0.45 +0.1 41,564 + IAI46_00180 0.79 -0.9 41,564 + IAI46_00180 0.79 -0.3 41,564 + IAI46_00180 0.79 -0.1 41,564 + IAI46_00180 0.79 +0.2 41,565 - IAI46_00180 0.79 +0.5 41,692 + -0.1 41,692 + -0.8 41,692 + -0.3 41,692 + +0.8 41,692 + +1.0 41,693 - -0.5 41,813 + IAI46_00185 0.18 +0.3 41,837 + IAI46_00185 0.21 -0.3 41,840 - IAI46_00185 0.21 -0.1 41,876 + IAI46_00185 0.26 +0.2 41,876 + IAI46_00185 0.26 -1.0 41,876 + IAI46_00185 0.26 -0.4 41,876 + IAI46_00185 0.26 +1.4 41,877 - IAI46_00185 0.26 +0.5 41,877 - IAI46_00185 0.26 -0.2 41,877 - IAI46_00185 0.26 +0.1 41,877 - IAI46_00185 0.26 +0.6 41,877 - IAI46_00185 0.26 -0.1 41,880 + IAI46_00185 0.27 -0.5 41,880 + IAI46_00185 0.27 -0.7 41,881 - IAI46_00185 0.27 -0.7 41,881 - IAI46_00185 0.27 +0.3 41,881 - IAI46_00185 0.27 +1.2 41,881 - IAI46_00185 0.27 -0.4 41,881 - IAI46_00185 0.27 +0.2 41,941 + IAI46_00185 0.34 +0.9 41,941 + IAI46_00185 0.34 -0.2 41,991 - IAI46_00185 0.41 +1.1 42,004 - IAI46_00185 0.42 +0.5 42,020 + IAI46_00185 0.44 +0.0 42,020 + IAI46_00185 0.44 +0.1 42,020 + IAI46_00185 0.44 -0.1 42,021 - IAI46_00185 0.45 -0.1 42,364 + IAI46_00185 0.89 +0.3 42,385 + +0.9 42,385 + -0.6 42,386 - +1.2 42,452 + +0.4 42,452 + +0.4 42,452 + +0.3 42,453 - +0.0 42,453 - +0.0 42,453 - +0.3 42,500 + -1.0 42,500 + -0.8 42,501 - +0.0 42,501 - +0.5 42,502 + +0.5 42,502 + -0.3 42,502 + +0.1 42,502 + +0.2 42,502 + +1.5 42,502 + -0.6 42,502 + -0.5 42,502 + +2.0 42,502 + -0.3 42,503 - +1.4 42,503 - -1.0 42,503 - +0.1 42,503 - -0.0 42,503 - +0.6 42,503 - +0.3 42,528 + -0.3 42,589 + -0.1 42,590 - -0.4 42,602 - -0.3 42,616 + -0.2 42,616 + +0.2 42,634 + IAI46_00190 0.10 +0.2 42,634 + IAI46_00190 0.10 +0.0
Or see this region's nucleotide sequence