Strain Fitness in Serratia liquefaciens MT49 around IAI46_00160

Experiment: Cobalt chloride 60 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00155 and IAI46_00160 are separated by 58 nucleotidesIAI46_00160 and IAI46_00165 are separated by 173 nucleotidesIAI46_00165 and IAI46_00170 overlap by 4 nucleotides IAI46_00155: IAI46_00155 - PTS mannitol transporter subunit IICBA, at 35,137 to 37,056 _00155 IAI46_00160: IAI46_00160 - mannitol-1-phosphate 5-dehydrogenase, at 37,115 to 38,269 _00160 IAI46_00165: IAI46_00165 - MltR family transcriptional regulator, at 38,443 to 38,994 _00165 IAI46_00170: IAI46_00170 - LysE family translocator, at 38,991 to 39,599 _00170 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.195 kb on - strand, within IAI46_00155at 36.217 kb on - strand, within IAI46_00155at 36.363 kb on + strand, within IAI46_00155at 36.508 kb on + strand, within IAI46_00155at 36.508 kb on + strand, within IAI46_00155at 36.508 kb on + strand, within IAI46_00155at 36.508 kb on + strand, within IAI46_00155at 36.508 kb on + strand, within IAI46_00155at 36.509 kb on - strand, within IAI46_00155at 36.509 kb on - strand, within IAI46_00155at 36.645 kb on + strand, within IAI46_00155at 36.713 kb on - strand, within IAI46_00155at 36.769 kb on + strand, within IAI46_00155at 36.769 kb on + strand, within IAI46_00155at 36.769 kb on + strand, within IAI46_00155at 36.853 kb on + strand, within IAI46_00155at 36.936 kb on + strandat 36.936 kb on + strandat 36.936 kb on + strandat 36.936 kb on + strandat 36.937 kb on - strandat 36.937 kb on - strandat 36.937 kb on - strandat 36.937 kb on - strandat 37.013 kb on + strandat 37.013 kb on + strandat 37.014 kb on - strandat 37.100 kb on + strandat 37.108 kb on + strandat 37.108 kb on + strandat 37.114 kb on + strandat 37.115 kb on - strandat 37.125 kb on + strandat 37.125 kb on + strandat 37.145 kb on - strandat 37.210 kb on + strandat 37.210 kb on + strandat 37.244 kb on - strand, within IAI46_00160at 37.250 kb on + strand, within IAI46_00160at 37.358 kb on - strand, within IAI46_00160at 37.405 kb on + strand, within IAI46_00160at 37.406 kb on - strand, within IAI46_00160at 37.408 kb on + strand, within IAI46_00160at 37.409 kb on - strand, within IAI46_00160at 37.503 kb on + strand, within IAI46_00160at 37.504 kb on - strand, within IAI46_00160at 37.931 kb on + strand, within IAI46_00160at 37.931 kb on + strand, within IAI46_00160at 37.931 kb on + strand, within IAI46_00160at 37.931 kb on + strand, within IAI46_00160at 37.932 kb on - strand, within IAI46_00160at 37.932 kb on - strand, within IAI46_00160at 37.933 kb on + strand, within IAI46_00160at 37.933 kb on + strand, within IAI46_00160at 37.934 kb on - strand, within IAI46_00160at 37.934 kb on - strand, within IAI46_00160at 38.114 kb on + strand, within IAI46_00160at 38.226 kb on + strandat 38.226 kb on + strandat 38.247 kb on - strandat 38.247 kb on - strandat 38.249 kb on - strandat 38.267 kb on + strandat 38.267 kb on + strandat 38.268 kb on - strandat 38.272 kb on + strandat 38.273 kb on - strandat 38.277 kb on + strandat 38.277 kb on + strandat 38.278 kb on - strandat 38.319 kb on + strandat 38.319 kb on + strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.320 kb on - strandat 38.322 kb on + strandat 38.322 kb on + strandat 38.322 kb on + strandat 38.323 kb on - strandat 38.383 kb on + strandat 38.383 kb on + strandat 38.384 kb on - strandat 38.384 kb on - strandat 38.388 kb on + strandat 38.391 kb on + strandat 38.392 kb on - strandat 38.396 kb on + strandat 38.406 kb on + strandat 38.413 kb on + strandat 38.413 kb on + strandat 38.413 kb on + strandat 38.414 kb on - strandat 38.469 kb on + strandat 38.469 kb on + strandat 38.470 kb on - strandat 38.519 kb on + strand, within IAI46_00165at 38.556 kb on - strand, within IAI46_00165at 38.588 kb on - strand, within IAI46_00165at 38.599 kb on + strand, within IAI46_00165at 38.599 kb on + strand, within IAI46_00165at 38.599 kb on + strand, within IAI46_00165at 38.599 kb on + strand, within IAI46_00165at 38.615 kb on + strand, within IAI46_00165at 38.615 kb on + strand, within IAI46_00165at 38.668 kb on + strand, within IAI46_00165at 38.668 kb on + strand, within IAI46_00165at 38.668 kb on + strand, within IAI46_00165at 38.669 kb on - strand, within IAI46_00165at 38.698 kb on + strand, within IAI46_00165at 38.698 kb on + strand, within IAI46_00165at 38.758 kb on + strand, within IAI46_00165at 38.759 kb on - strand, within IAI46_00165at 38.913 kb on + strand, within IAI46_00165at 38.913 kb on + strand, within IAI46_00165at 38.913 kb on + strand, within IAI46_00165at 38.914 kb on - strand, within IAI46_00165at 39.162 kb on - strand, within IAI46_00170at 39.185 kb on + strand, within IAI46_00170at 39.185 kb on + strand, within IAI46_00170at 39.185 kb on + strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170at 39.186 kb on - strand, within IAI46_00170

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic
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36,195 - IAI46_00155 0.55 +0.3
36,217 - IAI46_00155 0.56 +0.2
36,363 + IAI46_00155 0.64 -0.4
36,508 + IAI46_00155 0.71 -0.3
36,508 + IAI46_00155 0.71 +0.0
36,508 + IAI46_00155 0.71 +0.4
36,508 + IAI46_00155 0.71 +0.0
36,508 + IAI46_00155 0.71 -0.4
36,509 - IAI46_00155 0.71 -0.2
36,509 - IAI46_00155 0.71 +0.8
36,645 + IAI46_00155 0.79 +0.6
36,713 - IAI46_00155 0.82 +0.1
36,769 + IAI46_00155 0.85 -0.2
36,769 + IAI46_00155 0.85 -0.1
36,769 + IAI46_00155 0.85 -0.1
36,853 + IAI46_00155 0.89 +1.6
36,936 + -0.0
36,936 + +0.3
36,936 + -0.5
36,936 + +0.4
36,937 - +0.5
36,937 - +0.8
36,937 - +0.2
36,937 - -0.0
37,013 + +0.2
37,013 + +0.8
37,014 - -0.1
37,100 + -0.1
37,108 + -0.3
37,108 + -0.3
37,114 + +1.1
37,115 - -0.0
37,125 + -0.8
37,125 + +0.2
37,145 - +0.3
37,210 + +0.2
37,210 + -0.2
37,244 - IAI46_00160 0.11 -1.7
37,250 + IAI46_00160 0.12 +0.2
37,358 - IAI46_00160 0.21 -0.2
37,405 + IAI46_00160 0.25 -2.2
37,406 - IAI46_00160 0.25 +0.4
37,408 + IAI46_00160 0.25 -0.1
37,409 - IAI46_00160 0.25 -0.2
37,503 + IAI46_00160 0.34 -1.0
37,504 - IAI46_00160 0.34 -0.1
37,931 + IAI46_00160 0.71 -0.4
37,931 + IAI46_00160 0.71 +0.4
37,931 + IAI46_00160 0.71 -0.2
37,931 + IAI46_00160 0.71 +0.8
37,932 - IAI46_00160 0.71 -0.5
37,932 - IAI46_00160 0.71 -0.4
37,933 + IAI46_00160 0.71 -0.8
37,933 + IAI46_00160 0.71 -0.2
37,934 - IAI46_00160 0.71 -0.6
37,934 - IAI46_00160 0.71 -0.2
38,114 + IAI46_00160 0.86 -0.9
38,226 + +0.5
38,226 + +0.2
38,247 - -1.2
38,247 - -0.0
38,249 - +0.0
38,267 + +0.0
38,267 + +0.0
38,268 - +0.3
38,272 + -0.5
38,273 - -0.5
38,277 + +0.2
38,277 + -0.6
38,278 - +1.2
38,319 + -0.5
38,319 + +0.3
38,320 - +0.9
38,320 - -0.7
38,320 - -0.4
38,320 - -1.5
38,320 - +0.7
38,320 - -0.5
38,320 - -0.5
38,320 - +0.4
38,322 + -0.4
38,322 + +0.6
38,322 + -0.5
38,323 - -0.2
38,383 + +0.2
38,383 + -0.5
38,384 - -0.2
38,384 - +1.2
38,388 + -0.5
38,391 + +0.2
38,392 - -0.3
38,396 + -0.7
38,406 + +0.3
38,413 + +1.0
38,413 + -0.4
38,413 + +0.5
38,414 - -0.3
38,469 + +1.1
38,469 + +0.7
38,470 - +1.2
38,519 + IAI46_00165 0.14 -0.3
38,556 - IAI46_00165 0.20 -0.7
38,588 - IAI46_00165 0.26 -0.5
38,599 + IAI46_00165 0.28 +0.4
38,599 + IAI46_00165 0.28 +0.1
38,599 + IAI46_00165 0.28 +0.3
38,599 + IAI46_00165 0.28 +0.4
38,615 + IAI46_00165 0.31 -0.2
38,615 + IAI46_00165 0.31 +1.2
38,668 + IAI46_00165 0.41 -0.7
38,668 + IAI46_00165 0.41 +0.9
38,668 + IAI46_00165 0.41 -0.4
38,669 - IAI46_00165 0.41 +0.2
38,698 + IAI46_00165 0.46 -0.9
38,698 + IAI46_00165 0.46 -0.6
38,758 + IAI46_00165 0.57 -0.1
38,759 - IAI46_00165 0.57 +1.8
38,913 + IAI46_00165 0.85 +0.4
38,913 + IAI46_00165 0.85 +0.2
38,913 + IAI46_00165 0.85 -0.2
38,914 - IAI46_00165 0.85 +0.8
39,162 - IAI46_00170 0.28 -0.1
39,185 + IAI46_00170 0.32 +0.1
39,185 + IAI46_00170 0.32 +0.3
39,185 + IAI46_00170 0.32 -1.0
39,186 - IAI46_00170 0.32 -0.2
39,186 - IAI46_00170 0.32 +0.1
39,186 - IAI46_00170 0.32 +0.5
39,186 - IAI46_00170 0.32 +0.1

Or see this region's nucleotide sequence