Experiment: Cobalt chloride 60 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00060 and IAI46_00065 are separated by 36 nucleotides IAI46_00065 and IAI46_00070 are separated by 134 nucleotides
IAI46_00060: IAI46_00060 - putative transporter, at 12,389 to 14,047
_00060
IAI46_00065: IAI46_00065 - valine--pyruvate transaminase, at 14,084 to 15,337
_00065
IAI46_00070: IAI46_00070 - alpha-amylase, at 15,472 to 17,541
_00070
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.084 kb on + strand, within IAI46_00060 at 13.085 kb on - strand, within IAI46_00060 at 13.085 kb on - strand, within IAI46_00060 at 13.085 kb on - strand, within IAI46_00060 at 13.158 kb on - strand, within IAI46_00060 at 13.158 kb on - strand, within IAI46_00060 at 13.392 kb on + strand, within IAI46_00060 at 13.392 kb on + strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.393 kb on - strand, within IAI46_00060 at 13.534 kb on - strand, within IAI46_00060 at 13.558 kb on + strand, within IAI46_00060 at 13.559 kb on - strand, within IAI46_00060 at 13.559 kb on - strand, within IAI46_00060 at 13.623 kb on + strand, within IAI46_00060 at 13.624 kb on - strand, within IAI46_00060 at 13.624 kb on - strand, within IAI46_00060 at 13.624 kb on - strand, within IAI46_00060 at 13.655 kb on + strand, within IAI46_00060 at 13.656 kb on - strand, within IAI46_00060 at 13.711 kb on - strand, within IAI46_00060 at 13.765 kb on + strand, within IAI46_00060 at 13.765 kb on + strand, within IAI46_00060 at 13.765 kb on + strand, within IAI46_00060 at 13.822 kb on - strand, within IAI46_00060 at 13.837 kb on - strand, within IAI46_00060 at 13.855 kb on + strand, within IAI46_00060 at 13.855 kb on + strand, within IAI46_00060 at 13.856 kb on - strand, within IAI46_00060 at 13.928 kb on - strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.977 kb on + strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 13.978 kb on - strand at 14.041 kb on + strand at 14.041 kb on + strand at 14.041 kb on + strand at 14.045 kb on + strand at 14.045 kb on + strand at 14.045 kb on + strand at 14.046 kb on - strand at 14.046 kb on - strand at 14.046 kb on - strand at 14.046 kb on - strand at 14.077 kb on - strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.167 kb on - strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.191 kb on + strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.192 kb on - strand at 14.226 kb on + strand, within IAI46_00065 at 14.227 kb on - strand, within IAI46_00065 at 14.227 kb on - strand, within IAI46_00065 at 14.244 kb on - strand, within IAI46_00065 at 14.244 kb on - strand, within IAI46_00065 at 14.244 kb on - strand, within IAI46_00065 at 14.271 kb on + strand, within IAI46_00065 at 14.272 kb on - strand, within IAI46_00065 at 14.309 kb on + strand, within IAI46_00065 at 14.386 kb on + strand, within IAI46_00065 at 14.409 kb on + strand, within IAI46_00065 at 14.509 kb on + strand, within IAI46_00065 at 14.510 kb on - strand, within IAI46_00065 at 14.614 kb on + strand, within IAI46_00065 at 14.638 kb on + strand, within IAI46_00065 at 14.638 kb on + strand, within IAI46_00065 at 14.639 kb on - strand, within IAI46_00065 at 14.654 kb on - strand, within IAI46_00065 at 14.654 kb on - strand, within IAI46_00065 at 14.676 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.753 kb on + strand, within IAI46_00065 at 14.754 kb on - strand, within IAI46_00065 at 14.754 kb on - strand, within IAI46_00065 at 14.813 kb on - strand, within IAI46_00065 at 14.838 kb on + strand, within IAI46_00065 at 14.839 kb on - strand, within IAI46_00065 at 14.839 kb on - strand, within IAI46_00065 at 14.927 kb on - strand, within IAI46_00065 at 14.927 kb on - strand, within IAI46_00065 at 14.928 kb on + strand, within IAI46_00065 at 14.928 kb on + strand, within IAI46_00065 at 14.929 kb on - strand, within IAI46_00065 at 14.929 kb on - strand, within IAI46_00065 at 14.977 kb on - strand, within IAI46_00065 at 14.977 kb on - strand, within IAI46_00065 at 14.995 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.129 kb on + strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.130 kb on - strand, within IAI46_00065 at 15.133 kb on + strand, within IAI46_00065 at 15.133 kb on + strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.134 kb on - strand, within IAI46_00065 at 15.234 kb on - strand at 15.234 kb on - strand at 15.234 kb on - strand at 15.282 kb on - strand at 15.289 kb on + strand at 15.349 kb on + strand at 15.350 kb on - strand at 15.365 kb on + strand at 15.365 kb on + strand at 15.366 kb on - strand at 15.366 kb on - strand at 15.412 kb on + strand at 15.412 kb on + strand at 15.431 kb on - strand at 15.453 kb on - strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.460 kb on + strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.461 kb on - strand at 15.473 kb on + strand at 15.473 kb on + strand at 15.539 kb on + strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.540 kb on - strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.542 kb on + strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.543 kb on - strand at 15.670 kb on - strand at 15.713 kb on - strand, within IAI46_00070 at 15.713 kb on - strand, within IAI46_00070 at 15.738 kb on - strand, within IAI46_00070 at 15.740 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.854 kb on + strand, within IAI46_00070 at 15.855 kb on - strand, within IAI46_00070 at 15.855 kb on - strand, within IAI46_00070 at 15.989 kb on + strand, within IAI46_00070 at 15.990 kb on - strand, within IAI46_00070 at 15.990 kb on - strand, within IAI46_00070 at 15.990 kb on - strand, within IAI46_00070 at 15.992 kb on + strand, within IAI46_00070 at 15.992 kb on + strand, within IAI46_00070 at 15.992 kb on + strand, within IAI46_00070 at 15.993 kb on - strand, within IAI46_00070 at 15.993 kb on - strand, within IAI46_00070 at 16.139 kb on - strand, within IAI46_00070 at 16.178 kb on + strand, within IAI46_00070 at 16.186 kb on + strand, within IAI46_00070 at 16.187 kb on - strand, within IAI46_00070 at 16.264 kb on - strand, within IAI46_00070
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 60 uM, anaerobic remove 13,084 + IAI46_00060 0.42 -0.0 13,084 + IAI46_00060 0.42 -0.2 13,084 + IAI46_00060 0.42 +0.5 13,084 + IAI46_00060 0.42 -0.3 13,084 + IAI46_00060 0.42 +0.3 13,084 + IAI46_00060 0.42 -0.4 13,084 + IAI46_00060 0.42 -0.3 13,084 + IAI46_00060 0.42 +0.0 13,085 - IAI46_00060 0.42 +0.3 13,085 - IAI46_00060 0.42 +0.1 13,085 - IAI46_00060 0.42 +0.3 13,158 - IAI46_00060 0.46 +0.5 13,158 - IAI46_00060 0.46 -0.5 13,392 + IAI46_00060 0.60 -0.5 13,392 + IAI46_00060 0.60 -0.7 13,393 - IAI46_00060 0.61 -0.8 13,393 - IAI46_00060 0.61 -0.6 13,393 - IAI46_00060 0.61 +0.6 13,393 - IAI46_00060 0.61 +0.9 13,393 - IAI46_00060 0.61 +0.2 13,393 - IAI46_00060 0.61 -0.5 13,393 - IAI46_00060 0.61 +1.4 13,393 - IAI46_00060 0.61 -0.1 13,393 - IAI46_00060 0.61 -0.4 13,534 - IAI46_00060 0.69 -0.1 13,558 + IAI46_00060 0.70 +0.6 13,559 - IAI46_00060 0.71 -1.2 13,559 - IAI46_00060 0.71 +0.3 13,623 + IAI46_00060 0.74 +1.1 13,624 - IAI46_00060 0.74 -0.1 13,624 - IAI46_00060 0.74 -0.4 13,624 - IAI46_00060 0.74 -0.4 13,655 + IAI46_00060 0.76 -1.2 13,656 - IAI46_00060 0.76 -0.6 13,711 - IAI46_00060 0.80 +0.3 13,765 + IAI46_00060 0.83 -0.2 13,765 + IAI46_00060 0.83 -0.4 13,765 + IAI46_00060 0.83 +0.5 13,822 - IAI46_00060 0.86 +0.1 13,837 - IAI46_00060 0.87 +0.7 13,855 + IAI46_00060 0.88 -0.2 13,855 + IAI46_00060 0.88 +1.1 13,856 - IAI46_00060 0.88 -0.3 13,928 - +0.7 13,977 + +0.7 13,977 + +2.1 13,977 + +1.2 13,977 + -0.4 13,977 + -0.3 13,977 + +0.1 13,978 - -0.6 13,978 - -0.5 13,978 - +0.8 13,978 - -1.7 13,978 - -0.1 13,978 - -0.5 13,978 - -1.1 14,041 + -0.5 14,041 + -1.0 14,041 + -0.4 14,045 + +0.2 14,045 + +1.4 14,045 + +0.3 14,046 - +0.4 14,046 - -0.3 14,046 - -0.1 14,046 - +0.3 14,077 - +0.2 14,166 + -0.4 14,166 + -0.5 14,167 - +2.0 14,167 - -0.1 14,167 - -0.7 14,167 - +1.4 14,167 - +0.2 14,167 - +0.0 14,167 - -0.2 14,167 - -0.4 14,167 - -1.1 14,191 + +0.6 14,191 + +0.4 14,191 + -0.5 14,191 + -0.4 14,191 + -0.4 14,191 + +0.1 14,192 - -1.2 14,192 - +0.4 14,192 - +0.3 14,192 - -0.6 14,192 - -0.5 14,226 + IAI46_00065 0.11 -0.2 14,227 - IAI46_00065 0.11 -1.4 14,227 - IAI46_00065 0.11 -0.9 14,244 - IAI46_00065 0.13 -0.0 14,244 - IAI46_00065 0.13 -1.1 14,244 - IAI46_00065 0.13 -0.8 14,271 + IAI46_00065 0.15 -0.2 14,272 - IAI46_00065 0.15 +0.5 14,309 + IAI46_00065 0.18 +0.2 14,386 + IAI46_00065 0.24 +0.9 14,409 + IAI46_00065 0.26 -0.2 14,509 + IAI46_00065 0.34 +0.5 14,510 - IAI46_00065 0.34 +0.2 14,614 + IAI46_00065 0.42 +0.1 14,638 + IAI46_00065 0.44 -0.2 14,638 + IAI46_00065 0.44 -0.0 14,639 - IAI46_00065 0.44 +0.4 14,654 - IAI46_00065 0.45 -0.2 14,654 - IAI46_00065 0.45 +0.4 14,676 + IAI46_00065 0.47 +0.6 14,753 + IAI46_00065 0.53 +0.2 14,753 + IAI46_00065 0.53 +0.5 14,753 + IAI46_00065 0.53 -1.2 14,754 - IAI46_00065 0.53 -0.7 14,754 - IAI46_00065 0.53 -0.1 14,813 - IAI46_00065 0.58 -0.0 14,838 + IAI46_00065 0.60 -0.2 14,839 - IAI46_00065 0.60 +0.5 14,839 - IAI46_00065 0.60 -0.5 14,927 - IAI46_00065 0.67 +0.1 14,927 - IAI46_00065 0.67 -0.3 14,928 + IAI46_00065 0.67 +0.3 14,928 + IAI46_00065 0.67 +0.6 14,929 - IAI46_00065 0.67 +0.0 14,929 - IAI46_00065 0.67 -0.7 14,977 - IAI46_00065 0.71 +0.1 14,977 - IAI46_00065 0.71 -0.3 14,995 + IAI46_00065 0.73 +0.8 15,129 + IAI46_00065 0.83 +0.1 15,129 + IAI46_00065 0.83 -0.8 15,129 + IAI46_00065 0.83 +0.3 15,129 + IAI46_00065 0.83 +0.4 15,129 + IAI46_00065 0.83 -0.0 15,130 - IAI46_00065 0.83 +0.3 15,130 - IAI46_00065 0.83 +0.1 15,130 - IAI46_00065 0.83 -0.2 15,130 - IAI46_00065 0.83 -0.6 15,133 + IAI46_00065 0.84 +0.1 15,133 + IAI46_00065 0.84 +0.2 15,134 - IAI46_00065 0.84 +0.1 15,134 - IAI46_00065 0.84 +1.0 15,134 - IAI46_00065 0.84 -0.3 15,134 - IAI46_00065 0.84 -0.1 15,234 - +0.1 15,234 - -0.3 15,234 - +0.1 15,282 - +1.1 15,289 + +0.8 15,349 + +0.1 15,350 - +0.0 15,365 + +0.3 15,365 + -0.6 15,366 - +1.5 15,366 - -0.4 15,412 + -0.2 15,412 + +0.2 15,431 - -0.7 15,453 - -0.4 15,460 + +0.0 15,460 + -0.7 15,460 + -1.2 15,460 + -0.8 15,460 + +0.0 15,460 + +0.2 15,460 + -0.1 15,460 + +1.0 15,460 + -0.6 15,461 - -0.0 15,461 - +0.1 15,461 - -0.0 15,473 + +0.4 15,473 + +0.5 15,539 + +0.0 15,540 - -0.6 15,540 - +0.1 15,540 - -0.0 15,540 - -0.2 15,540 - +0.3 15,540 - +0.4 15,542 + +0.9 15,542 + -0.3 15,542 + -0.1 15,543 - +0.1 15,543 - -0.7 15,543 - -0.6 15,670 - +0.2 15,713 - IAI46_00070 0.12 -1.0 15,713 - IAI46_00070 0.12 +0.1 15,738 - IAI46_00070 0.13 +1.6 15,740 + IAI46_00070 0.13 -0.2 15,854 + IAI46_00070 0.18 +0.6 15,854 + IAI46_00070 0.18 +0.6 15,854 + IAI46_00070 0.18 +0.7 15,854 + IAI46_00070 0.18 +0.1 15,854 + IAI46_00070 0.18 -0.4 15,854 + IAI46_00070 0.18 +0.9 15,855 - IAI46_00070 0.19 +0.7 15,855 - IAI46_00070 0.19 +0.3 15,989 + IAI46_00070 0.25 -0.1 15,990 - IAI46_00070 0.25 +0.1 15,990 - IAI46_00070 0.25 +0.4 15,990 - IAI46_00070 0.25 -0.0 15,992 + IAI46_00070 0.25 +0.8 15,992 + IAI46_00070 0.25 -0.6 15,992 + IAI46_00070 0.25 +0.4 15,993 - IAI46_00070 0.25 -0.4 15,993 - IAI46_00070 0.25 -0.2 16,139 - IAI46_00070 0.32 +0.4 16,178 + IAI46_00070 0.34 -0.5 16,186 + IAI46_00070 0.34 +0.6 16,187 - IAI46_00070 0.35 +0.1 16,264 - IAI46_00070 0.38 -0.7
Or see this region's nucleotide sequence