Experiment: Adenosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28900 and ABIE40_RS28905 are separated by 5 nucleotides ABIE40_RS28905 and ABIE40_RS28910 are separated by 147 nucleotides ABIE40_RS28910 and ABIE40_RS28915 are separated by 169 nucleotides
ABIE40_RS28900: ABIE40_RS28900 - HD domain-containing protein, at 481,765 to 482,187
_RS28900
ABIE40_RS28905: ABIE40_RS28905 - DUF2934 domain-containing protein, at 482,193 to 482,501
_RS28905
ABIE40_RS28910: ABIE40_RS28910 - PAS domain S-box protein, at 482,649 to 483,734
_RS28910
ABIE40_RS28915: ABIE40_RS28915 - ATPase domain-containing protein, at 483,904 to 485,343
_RS28915
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.655 kb on + strand at 481.706 kb on + strand at 481.706 kb on + strand at 481.707 kb on - strand at 481.707 kb on - strand at 481.757 kb on + strand at 481.757 kb on + strand at 481.758 kb on - strand at 481.758 kb on - strand at 481.814 kb on + strand, within ABIE40_RS28900 at 481.814 kb on + strand, within ABIE40_RS28900 at 481.814 kb on + strand, within ABIE40_RS28900 at 481.815 kb on - strand, within ABIE40_RS28900 at 482.048 kb on + strand, within ABIE40_RS28900 at 482.049 kb on - strand, within ABIE40_RS28900 at 482.049 kb on - strand, within ABIE40_RS28900 at 482.049 kb on - strand, within ABIE40_RS28900 at 482.151 kb on + strand at 482.354 kb on + strand, within ABIE40_RS28905 at 482.355 kb on - strand, within ABIE40_RS28905 at 482.388 kb on + strand, within ABIE40_RS28905 at 482.388 kb on + strand, within ABIE40_RS28905 at 482.496 kb on - strand at 482.541 kb on + strand at 482.541 kb on + strand at 482.541 kb on + strand at 482.541 kb on + strand at 482.542 kb on - strand at 482.542 kb on - strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.605 kb on + strand at 482.605 kb on + strand at 482.605 kb on + strand at 482.606 kb on - strand at 482.606 kb on - strand at 482.606 kb on - strand at 482.606 kb on - strand at 482.774 kb on + strand, within ABIE40_RS28910 at 482.908 kb on + strand, within ABIE40_RS28910 at 482.908 kb on + strand, within ABIE40_RS28910 at 482.909 kb on - strand, within ABIE40_RS28910 at 482.909 kb on - strand, within ABIE40_RS28910 at 482.930 kb on - strand, within ABIE40_RS28910 at 482.930 kb on - strand, within ABIE40_RS28910 at 482.958 kb on + strand, within ABIE40_RS28910 at 482.959 kb on - strand, within ABIE40_RS28910 at 482.959 kb on - strand, within ABIE40_RS28910 at 483.026 kb on - strand, within ABIE40_RS28910 at 483.203 kb on + strand, within ABIE40_RS28910 at 483.203 kb on + strand, within ABIE40_RS28910 at 483.204 kb on - strand, within ABIE40_RS28910 at 483.204 kb on - strand, within ABIE40_RS28910 at 483.327 kb on - strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.369 kb on + strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.370 kb on - strand, within ABIE40_RS28910 at 483.392 kb on + strand, within ABIE40_RS28910 at 483.392 kb on + strand, within ABIE40_RS28910 at 483.392 kb on + strand, within ABIE40_RS28910 at 483.393 kb on - strand, within ABIE40_RS28910 at 483.393 kb on - strand, within ABIE40_RS28910 at 483.497 kb on + strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.498 kb on - strand, within ABIE40_RS28910 at 483.524 kb on + strand, within ABIE40_RS28910 at 483.525 kb on - strand, within ABIE40_RS28910 at 483.525 kb on - strand, within ABIE40_RS28910 at 483.525 kb on - strand, within ABIE40_RS28910 at 483.527 kb on - strand, within ABIE40_RS28910 at 483.617 kb on + strand, within ABIE40_RS28910 at 483.725 kb on + strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.726 kb on - strand at 483.741 kb on + strand at 483.761 kb on + strand at 483.761 kb on + strand at 483.762 kb on - strand at 483.768 kb on + strand at 483.798 kb on + strand at 483.798 kb on + strand at 483.799 kb on - strand at 483.818 kb on + strand at 483.818 kb on + strand at 483.866 kb on - strand at 483.883 kb on + strand at 483.883 kb on + strand at 483.883 kb on + strand at 483.883 kb on + strand at 483.884 kb on - strand at 483.886 kb on + strand at 483.887 kb on - strand at 483.923 kb on + strand at 483.923 kb on + strand at 483.924 kb on - strand at 483.924 kb on - strand at 483.924 kb on - strand at 483.985 kb on + strand at 483.985 kb on + strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 483.986 kb on - strand at 484.024 kb on + strand at 484.075 kb on + strand, within ABIE40_RS28915 at 484.076 kb on - strand, within ABIE40_RS28915 at 484.076 kb on - strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.171 kb on + strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.172 kb on - strand, within ABIE40_RS28915 at 484.374 kb on - strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.439 kb on + strand, within ABIE40_RS28915 at 484.440 kb on - strand, within ABIE40_RS28915 at 484.492 kb on - strand, within ABIE40_RS28915 at 484.526 kb on - strand, within ABIE40_RS28915 at 484.564 kb on + strand, within ABIE40_RS28915 at 484.564 kb on + strand, within ABIE40_RS28915 at 484.564 kb on + strand, within ABIE40_RS28915 at 484.611 kb on + strand, within ABIE40_RS28915 at 484.612 kb on - strand, within ABIE40_RS28915 at 484.632 kb on + strand, within ABIE40_RS28915
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) remove 481,655 + -1.6 481,706 + -0.7 481,706 + +0.4 481,707 - -0.1 481,707 - +2.5 481,757 + -1.4 481,757 + -1.7 481,758 - -0.0 481,758 - +1.8 481,814 + ABIE40_RS28900 0.12 +0.2 481,814 + ABIE40_RS28900 0.12 -0.4 481,814 + ABIE40_RS28900 0.12 -1.3 481,815 - ABIE40_RS28900 0.12 -0.4 482,048 + ABIE40_RS28900 0.67 -1.1 482,049 - ABIE40_RS28900 0.67 -0.4 482,049 - ABIE40_RS28900 0.67 +0.8 482,049 - ABIE40_RS28900 0.67 +0.4 482,151 + +1.2 482,354 + ABIE40_RS28905 0.52 +0.9 482,355 - ABIE40_RS28905 0.52 -0.3 482,388 + ABIE40_RS28905 0.63 -0.6 482,388 + ABIE40_RS28905 0.63 -0.1 482,496 - -0.3 482,541 + -1.0 482,541 + -1.0 482,541 + +1.3 482,541 + -0.1 482,542 - -0.8 482,542 - -1.7 482,585 - +1.5 482,585 - -0.2 482,605 + -0.3 482,605 + +1.5 482,605 + +0.0 482,606 - -1.1 482,606 - -0.4 482,606 - -0.3 482,606 - -0.6 482,774 + ABIE40_RS28910 0.12 +0.2 482,908 + ABIE40_RS28910 0.24 +0.2 482,908 + ABIE40_RS28910 0.24 +0.1 482,909 - ABIE40_RS28910 0.24 -0.5 482,909 - ABIE40_RS28910 0.24 -0.1 482,930 - ABIE40_RS28910 0.26 -1.4 482,930 - ABIE40_RS28910 0.26 -1.1 482,958 + ABIE40_RS28910 0.28 -2.6 482,959 - ABIE40_RS28910 0.29 -2.6 482,959 - ABIE40_RS28910 0.29 +1.2 483,026 - ABIE40_RS28910 0.35 -0.3 483,203 + ABIE40_RS28910 0.51 -0.3 483,203 + ABIE40_RS28910 0.51 -0.8 483,204 - ABIE40_RS28910 0.51 -0.6 483,204 - ABIE40_RS28910 0.51 -0.5 483,327 - ABIE40_RS28910 0.62 -2.9 483,369 + ABIE40_RS28910 0.66 +0.8 483,369 + ABIE40_RS28910 0.66 +0.9 483,369 + ABIE40_RS28910 0.66 +0.3 483,369 + ABIE40_RS28910 0.66 -1.4 483,370 - ABIE40_RS28910 0.66 -0.3 483,370 - ABIE40_RS28910 0.66 +0.1 483,370 - ABIE40_RS28910 0.66 -0.5 483,370 - ABIE40_RS28910 0.66 -0.3 483,392 + ABIE40_RS28910 0.68 -0.0 483,392 + ABIE40_RS28910 0.68 +2.5 483,392 + ABIE40_RS28910 0.68 +0.5 483,393 - ABIE40_RS28910 0.69 -1.0 483,393 - ABIE40_RS28910 0.69 +0.9 483,497 + ABIE40_RS28910 0.78 -0.3 483,498 - ABIE40_RS28910 0.78 -1.6 483,498 - ABIE40_RS28910 0.78 +0.0 483,498 - ABIE40_RS28910 0.78 +0.1 483,498 - ABIE40_RS28910 0.78 +1.9 483,524 + ABIE40_RS28910 0.81 -0.2 483,525 - ABIE40_RS28910 0.81 -1.0 483,525 - ABIE40_RS28910 0.81 -0.6 483,525 - ABIE40_RS28910 0.81 -0.6 483,527 - ABIE40_RS28910 0.81 -0.6 483,617 + ABIE40_RS28910 0.89 -0.7 483,725 + -1.2 483,726 - -1.7 483,726 - +0.2 483,726 - -1.1 483,726 - +2.5 483,726 - +0.9 483,741 + +1.4 483,761 + -0.5 483,761 + +0.3 483,762 - -0.7 483,768 + +0.2 483,798 + +0.2 483,798 + +0.4 483,799 - +0.2 483,818 + -0.2 483,818 + -0.1 483,866 - -2.2 483,883 + -0.8 483,883 + -0.9 483,883 + -0.1 483,883 + +1.3 483,884 - +0.5 483,886 + -0.5 483,887 - -1.5 483,923 + +2.1 483,923 + +1.2 483,924 - -0.1 483,924 - -1.3 483,924 - -1.7 483,985 + +1.8 483,985 + -2.7 483,986 - +0.2 483,986 - +0.2 483,986 - +0.4 483,986 - +0.6 483,986 - -0.2 483,986 - +0.4 483,986 - +0.6 483,986 - -2.6 484,024 + -0.9 484,075 + ABIE40_RS28915 0.12 -0.4 484,076 - ABIE40_RS28915 0.12 -0.5 484,076 - ABIE40_RS28915 0.12 +0.7 484,171 + ABIE40_RS28915 0.19 +0.2 484,171 + ABIE40_RS28915 0.19 +0.6 484,171 + ABIE40_RS28915 0.19 -0.5 484,171 + ABIE40_RS28915 0.19 -1.1 484,171 + ABIE40_RS28915 0.19 +1.4 484,172 - ABIE40_RS28915 0.19 +0.9 484,172 - ABIE40_RS28915 0.19 -0.4 484,172 - ABIE40_RS28915 0.19 -0.5 484,172 - ABIE40_RS28915 0.19 +0.7 484,172 - ABIE40_RS28915 0.19 +0.6 484,374 - ABIE40_RS28915 0.33 -0.1 484,439 + ABIE40_RS28915 0.37 -0.7 484,439 + ABIE40_RS28915 0.37 +1.9 484,439 + ABIE40_RS28915 0.37 -1.6 484,439 + ABIE40_RS28915 0.37 +0.2 484,440 - ABIE40_RS28915 0.37 -0.6 484,492 - ABIE40_RS28915 0.41 -0.2 484,526 - ABIE40_RS28915 0.43 -0.2 484,564 + ABIE40_RS28915 0.46 +1.2 484,564 + ABIE40_RS28915 0.46 -0.5 484,564 + ABIE40_RS28915 0.46 -0.0 484,611 + ABIE40_RS28915 0.49 +0.8 484,612 - ABIE40_RS28915 0.49 +0.0 484,632 + ABIE40_RS28915 0.51 -0.6
Or see this region's nucleotide sequence