Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27435

Experiment: Adenosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27425 and ABIE40_RS27430 are separated by 127 nucleotidesABIE40_RS27430 and ABIE40_RS27435 are separated by 371 nucleotidesABIE40_RS27435 and ABIE40_RS27440 are separated by 21 nucleotidesABIE40_RS27440 and ABIE40_RS27445 are separated by 4 nucleotides ABIE40_RS27425: ABIE40_RS27425 - hypothetical protein, at 196,955 to 197,395 _RS27425 ABIE40_RS27430: ABIE40_RS27430 - hypothetical protein, at 197,523 to 197,783 _RS27430 ABIE40_RS27435: ABIE40_RS27435 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 198,155 to 199,468 _RS27435 ABIE40_RS27440: ABIE40_RS27440 - DUF4112 domain-containing protein, at 199,490 to 199,867 _RS27440 ABIE40_RS27445: ABIE40_RS27445 - response regulator, at 199,872 to 200,261 _RS27445 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1 2 3at 197.226 kb on - strand, within ABIE40_RS27425at 197.227 kb on + strand, within ABIE40_RS27425at 197.227 kb on + strand, within ABIE40_RS27425at 197.228 kb on - strand, within ABIE40_RS27425at 197.228 kb on - strand, within ABIE40_RS27425at 197.228 kb on - strand, within ABIE40_RS27425at 197.478 kb on - strandat 197.603 kb on + strand, within ABIE40_RS27430at 197.603 kb on + strand, within ABIE40_RS27430at 197.604 kb on - strand, within ABIE40_RS27430at 197.604 kb on - strand, within ABIE40_RS27430at 197.604 kb on - strand, within ABIE40_RS27430at 197.604 kb on - strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.607 kb on + strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.608 kb on - strand, within ABIE40_RS27430at 197.610 kb on - strand, within ABIE40_RS27430at 197.723 kb on + strand, within ABIE40_RS27430at 197.725 kb on + strand, within ABIE40_RS27430at 197.725 kb on + strand, within ABIE40_RS27430at 197.725 kb on + strand, within ABIE40_RS27430at 197.726 kb on - strand, within ABIE40_RS27430at 197.726 kb on - strand, within ABIE40_RS27430at 197.726 kb on - strand, within ABIE40_RS27430at 197.726 kb on - strand, within ABIE40_RS27430at 197.892 kb on - strandat 197.892 kb on - strandat 197.893 kb on + strandat 197.893 kb on + strandat 197.894 kb on - strandat 197.894 kb on - strandat 197.901 kb on + strandat 198.047 kb on + strandat 198.047 kb on + strandat 198.048 kb on - strandat 198.149 kb on + strandat 198.254 kb on + strandat 198.255 kb on - strandat 198.255 kb on - strandat 198.255 kb on - strandat 198.284 kb on + strandat 198.284 kb on + strandat 198.285 kb on - strandat 198.365 kb on + strand, within ABIE40_RS27435at 198.365 kb on + strand, within ABIE40_RS27435at 198.365 kb on + strand, within ABIE40_RS27435at 198.605 kb on + strand, within ABIE40_RS27435at 198.605 kb on + strand, within ABIE40_RS27435at 198.605 kb on + strand, within ABIE40_RS27435at 198.605 kb on + strand, within ABIE40_RS27435at 198.605 kb on + strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.606 kb on - strand, within ABIE40_RS27435at 198.616 kb on + strand, within ABIE40_RS27435at 198.623 kb on + strand, within ABIE40_RS27435at 198.623 kb on + strand, within ABIE40_RS27435at 198.623 kb on + strand, within ABIE40_RS27435at 198.623 kb on + strand, within ABIE40_RS27435at 198.623 kb on + strand, within ABIE40_RS27435at 198.624 kb on - strand, within ABIE40_RS27435at 198.624 kb on - strand, within ABIE40_RS27435at 198.624 kb on - strand, within ABIE40_RS27435at 198.624 kb on - strand, within ABIE40_RS27435at 198.624 kb on - strand, within ABIE40_RS27435at 198.624 kb on - strand, within ABIE40_RS27435at 198.626 kb on - strand, within ABIE40_RS27435at 198.626 kb on - strand, within ABIE40_RS27435at 198.626 kb on - strand, within ABIE40_RS27435at 198.650 kb on + strand, within ABIE40_RS27435at 198.650 kb on + strand, within ABIE40_RS27435at 198.650 kb on + strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.651 kb on - strand, within ABIE40_RS27435at 198.654 kb on + strand, within ABIE40_RS27435at 198.654 kb on + strand, within ABIE40_RS27435at 198.655 kb on - strand, within ABIE40_RS27435at 198.655 kb on - strand, within ABIE40_RS27435at 199.018 kb on + strand, within ABIE40_RS27435at 199.019 kb on - strand, within ABIE40_RS27435at 199.052 kb on + strand, within ABIE40_RS27435at 199.052 kb on + strand, within ABIE40_RS27435at 199.052 kb on + strand, within ABIE40_RS27435at 199.140 kb on + strand, within ABIE40_RS27435at 199.238 kb on + strand, within ABIE40_RS27435at 199.238 kb on + strand, within ABIE40_RS27435at 199.239 kb on - strand, within ABIE40_RS27435at 199.557 kb on + strand, within ABIE40_RS27440at 199.558 kb on - strand, within ABIE40_RS27440at 199.656 kb on - strand, within ABIE40_RS27440at 199.935 kb on - strand, within ABIE40_RS27445at 199.935 kb on - strand, within ABIE40_RS27445at 199.984 kb on - strand, within ABIE40_RS27445at 200.161 kb on + strand, within ABIE40_RS27445at 200.161 kb on + strand, within ABIE40_RS27445at 200.161 kb on + strand, within ABIE40_RS27445at 200.161 kb on + strand, within ABIE40_RS27445at 200.162 kb on - strand, within ABIE40_RS27445at 200.162 kb on - strand, within ABIE40_RS27445at 200.252 kb on + strandat 200.252 kb on + strandat 200.253 kb on - strandat 200.277 kb on + strandat 200.277 kb on + strandat 200.278 kb on - strandat 200.291 kb on - strandat 200.310 kb on + strandat 200.311 kb on - strandat 200.356 kb on + strandat 200.357 kb on - strandat 200.358 kb on + strandat 200.358 kb on + strandat 200.359 kb on - strandat 200.363 kb on + strandat 200.364 kb on + strandat 200.364 kb on + strandat 200.364 kb on + strandat 200.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C)
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197,226 - ABIE40_RS27425 0.61 +0.4
197,227 + ABIE40_RS27425 0.62 +1.1
197,227 + ABIE40_RS27425 0.62 +0.4
197,228 - ABIE40_RS27425 0.62 -0.7
197,228 - ABIE40_RS27425 0.62 -0.5
197,228 - ABIE40_RS27425 0.62 +0.4
197,478 - -0.9
197,603 + ABIE40_RS27430 0.31 -0.9
197,603 + ABIE40_RS27430 0.31 +0.8
197,604 - ABIE40_RS27430 0.31 +1.6
197,604 - ABIE40_RS27430 0.31 -0.4
197,604 - ABIE40_RS27430 0.31 +0.7
197,604 - ABIE40_RS27430 0.31 +0.3
197,607 + ABIE40_RS27430 0.32 -0.8
197,607 + ABIE40_RS27430 0.32 -0.1
197,607 + ABIE40_RS27430 0.32 +0.5
197,607 + ABIE40_RS27430 0.32 +0.8
197,607 + ABIE40_RS27430 0.32 +0.0
197,607 + ABIE40_RS27430 0.32 +3.6
197,607 + ABIE40_RS27430 0.32 -0.5
197,607 + ABIE40_RS27430 0.32 -0.5
197,607 + ABIE40_RS27430 0.32 +1.3
197,607 + ABIE40_RS27430 0.32 -1.5
197,607 + ABIE40_RS27430 0.32 -0.4
197,607 + ABIE40_RS27430 0.32 -0.1
197,608 - ABIE40_RS27430 0.33 +0.4
197,608 - ABIE40_RS27430 0.33 +0.4
197,608 - ABIE40_RS27430 0.33 -0.2
197,608 - ABIE40_RS27430 0.33 +0.9
197,608 - ABIE40_RS27430 0.33 +0.9
197,608 - ABIE40_RS27430 0.33 +1.4
197,608 - ABIE40_RS27430 0.33 -0.4
197,608 - ABIE40_RS27430 0.33 -1.1
197,608 - ABIE40_RS27430 0.33 -1.0
197,608 - ABIE40_RS27430 0.33 -1.2
197,608 - ABIE40_RS27430 0.33 +0.0
197,608 - ABIE40_RS27430 0.33 +0.2
197,610 - ABIE40_RS27430 0.33 -1.4
197,723 + ABIE40_RS27430 0.77 -0.2
197,725 + ABIE40_RS27430 0.77 +0.9
197,725 + ABIE40_RS27430 0.77 -1.5
197,725 + ABIE40_RS27430 0.77 +0.5
197,726 - ABIE40_RS27430 0.78 +0.0
197,726 - ABIE40_RS27430 0.78 -0.4
197,726 - ABIE40_RS27430 0.78 -1.2
197,726 - ABIE40_RS27430 0.78 +0.0
197,892 - -0.6
197,892 - +0.7
197,893 + -0.9
197,893 + +0.6
197,894 - -0.9
197,894 - +0.2
197,901 + -0.3
198,047 + -0.4
198,047 + -0.1
198,048 - +0.7
198,149 + -1.5
198,254 + -0.1
198,255 - -0.6
198,255 - -0.4
198,255 - +0.7
198,284 + -0.4
198,284 + +0.1
198,285 - +0.5
198,365 + ABIE40_RS27435 0.16 +0.8
198,365 + ABIE40_RS27435 0.16 +1.0
198,365 + ABIE40_RS27435 0.16 +2.0
198,605 + ABIE40_RS27435 0.34 -1.0
198,605 + ABIE40_RS27435 0.34 +0.4
198,605 + ABIE40_RS27435 0.34 +1.3
198,605 + ABIE40_RS27435 0.34 -0.2
198,605 + ABIE40_RS27435 0.34 +0.2
198,606 - ABIE40_RS27435 0.34 -0.3
198,606 - ABIE40_RS27435 0.34 +0.1
198,606 - ABIE40_RS27435 0.34 +1.5
198,606 - ABIE40_RS27435 0.34 -0.5
198,606 - ABIE40_RS27435 0.34 -0.5
198,606 - ABIE40_RS27435 0.34 +2.1
198,606 - ABIE40_RS27435 0.34 +0.4
198,616 + ABIE40_RS27435 0.35 -0.9
198,623 + ABIE40_RS27435 0.36 +0.6
198,623 + ABIE40_RS27435 0.36 -0.9
198,623 + ABIE40_RS27435 0.36 +0.3
198,623 + ABIE40_RS27435 0.36 +0.2
198,623 + ABIE40_RS27435 0.36 -0.8
198,624 - ABIE40_RS27435 0.36 +0.3
198,624 - ABIE40_RS27435 0.36 -1.9
198,624 - ABIE40_RS27435 0.36 +0.7
198,624 - ABIE40_RS27435 0.36 +1.1
198,624 - ABIE40_RS27435 0.36 -0.3
198,624 - ABIE40_RS27435 0.36 +0.5
198,626 - ABIE40_RS27435 0.36 -0.1
198,626 - ABIE40_RS27435 0.36 -0.8
198,626 - ABIE40_RS27435 0.36 +0.1
198,650 + ABIE40_RS27435 0.38 -1.7
198,650 + ABIE40_RS27435 0.38 +0.9
198,650 + ABIE40_RS27435 0.38 +2.9
198,651 - ABIE40_RS27435 0.38 -1.4
198,651 - ABIE40_RS27435 0.38 -0.8
198,651 - ABIE40_RS27435 0.38 +0.8
198,651 - ABIE40_RS27435 0.38 -0.2
198,651 - ABIE40_RS27435 0.38 +0.8
198,651 - ABIE40_RS27435 0.38 +0.3
198,651 - ABIE40_RS27435 0.38 +0.0
198,654 + ABIE40_RS27435 0.38 -0.3
198,654 + ABIE40_RS27435 0.38 -0.2
198,655 - ABIE40_RS27435 0.38 +0.2
198,655 - ABIE40_RS27435 0.38 +0.6
199,018 + ABIE40_RS27435 0.66 +1.0
199,019 - ABIE40_RS27435 0.66 -0.2
199,052 + ABIE40_RS27435 0.68 +0.7
199,052 + ABIE40_RS27435 0.68 +0.6
199,052 + ABIE40_RS27435 0.68 +0.7
199,140 + ABIE40_RS27435 0.75 -0.2
199,238 + ABIE40_RS27435 0.82 -0.5
199,238 + ABIE40_RS27435 0.82 -1.2
199,239 - ABIE40_RS27435 0.82 +0.6
199,557 + ABIE40_RS27440 0.18 +0.2
199,558 - ABIE40_RS27440 0.18 -0.1
199,656 - ABIE40_RS27440 0.44 +0.8
199,935 - ABIE40_RS27445 0.16 -0.7
199,935 - ABIE40_RS27445 0.16 -0.4
199,984 - ABIE40_RS27445 0.29 -0.7
200,161 + ABIE40_RS27445 0.74 +1.6
200,161 + ABIE40_RS27445 0.74 +0.2
200,161 + ABIE40_RS27445 0.74 +0.1
200,161 + ABIE40_RS27445 0.74 +0.4
200,162 - ABIE40_RS27445 0.74 -0.7
200,162 - ABIE40_RS27445 0.74 -0.4
200,252 + +0.4
200,252 + -2.5
200,253 - -1.3
200,277 + +0.3
200,277 + -0.4
200,278 - +0.3
200,291 - -0.4
200,310 + -1.2
200,311 - +0.2
200,356 + +0.8
200,357 - -0.2
200,358 + -0.1
200,358 + -0.5
200,359 - -2.3
200,363 + -0.4
200,364 + -0.9
200,364 + +1.0
200,364 + +1.6
200,364 + -0.4

Or see this region's nucleotide sequence