Experiment: Adenosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS25295 and ABIE40_RS25300 are separated by 29 nucleotides ABIE40_RS25300 and ABIE40_RS25305 overlap by 1 nucleotides ABIE40_RS25305 and ABIE40_RS25310 are separated by 66 nucleotides
ABIE40_RS25295: ABIE40_RS25295 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 1,234,038 to 1,234,880
_RS25295
ABIE40_RS25300: ABIE40_RS25300 - ATP-binding cassette domain-containing protein, at 1,234,910 to 1,235,647
_RS25300
ABIE40_RS25305: ABIE40_RS25305 - ABC transporter permease, at 1,235,647 to 1,236,666
_RS25305
ABIE40_RS25310: ABIE40_RS25310 - substrate-binding domain-containing protein, at 1,236,733 to 1,237,683
_RS25310
Position (kb) 1235
1236
1237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1234.753 kb on + strand, within ABIE40_RS25295 at 1234.753 kb on + strand, within ABIE40_RS25295 at 1234.754 kb on - strand, within ABIE40_RS25295 at 1234.754 kb on - strand, within ABIE40_RS25295 at 1234.754 kb on - strand, within ABIE40_RS25295 at 1234.754 kb on - strand, within ABIE40_RS25295 at 1234.820 kb on + strand at 1234.872 kb on + strand at 1234.872 kb on + strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.873 kb on - strand at 1234.926 kb on + strand at 1234.926 kb on + strand at 1234.927 kb on - strand at 1234.927 kb on - strand at 1234.927 kb on - strand at 1234.930 kb on - strand at 1234.973 kb on + strand at 1234.973 kb on + strand at 1234.974 kb on - strand at 1235.020 kb on - strand, within ABIE40_RS25300 at 1235.028 kb on + strand, within ABIE40_RS25300 at 1235.028 kb on + strand, within ABIE40_RS25300 at 1235.164 kb on - strand, within ABIE40_RS25300 at 1235.164 kb on - strand, within ABIE40_RS25300 at 1235.249 kb on - strand, within ABIE40_RS25300 at 1235.381 kb on - strand, within ABIE40_RS25300 at 1235.381 kb on - strand, within ABIE40_RS25300 at 1235.388 kb on + strand, within ABIE40_RS25300 at 1235.388 kb on + strand, within ABIE40_RS25300 at 1235.388 kb on + strand, within ABIE40_RS25300 at 1235.388 kb on + strand, within ABIE40_RS25300 at 1235.388 kb on + strand, within ABIE40_RS25300 at 1235.463 kb on + strand, within ABIE40_RS25300 at 1235.463 kb on + strand, within ABIE40_RS25300 at 1235.463 kb on + strand, within ABIE40_RS25300 at 1235.614 kb on + strand at 1235.615 kb on - strand at 1235.615 kb on - strand at 1235.684 kb on - strand at 1235.726 kb on + strand at 1235.727 kb on - strand at 1235.983 kb on - strand, within ABIE40_RS25305 at 1236.186 kb on + strand, within ABIE40_RS25305 at 1236.186 kb on + strand, within ABIE40_RS25305 at 1236.188 kb on + strand, within ABIE40_RS25305 at 1236.188 kb on + strand, within ABIE40_RS25305 at 1236.188 kb on + strand, within ABIE40_RS25305 at 1236.188 kb on + strand, within ABIE40_RS25305 at 1236.188 kb on + strand, within ABIE40_RS25305 at 1236.189 kb on - strand, within ABIE40_RS25305 at 1236.189 kb on - strand, within ABIE40_RS25305 at 1236.189 kb on - strand, within ABIE40_RS25305 at 1236.189 kb on - strand, within ABIE40_RS25305 at 1236.189 kb on - strand, within ABIE40_RS25305 at 1236.381 kb on - strand, within ABIE40_RS25305 at 1236.537 kb on + strand, within ABIE40_RS25305 at 1236.538 kb on - strand, within ABIE40_RS25305 at 1236.658 kb on - strand at 1236.674 kb on + strand at 1236.674 kb on + strand at 1236.707 kb on + strand at 1236.708 kb on - strand at 1236.708 kb on - strand at 1236.740 kb on + strand at 1236.740 kb on + strand at 1236.740 kb on + strand at 1236.830 kb on + strand, within ABIE40_RS25310 at 1236.867 kb on - strand, within ABIE40_RS25310 at 1236.867 kb on - strand, within ABIE40_RS25310 at 1236.878 kb on + strand, within ABIE40_RS25310 at 1236.878 kb on + strand, within ABIE40_RS25310 at 1236.987 kb on + strand, within ABIE40_RS25310 at 1237.109 kb on - strand, within ABIE40_RS25310 at 1237.130 kb on - strand, within ABIE40_RS25310 at 1237.263 kb on - strand, within ABIE40_RS25310 at 1237.292 kb on + strand, within ABIE40_RS25310 at 1237.292 kb on + strand, within ABIE40_RS25310 at 1237.292 kb on + strand, within ABIE40_RS25310 at 1237.292 kb on + strand, within ABIE40_RS25310 at 1237.293 kb on - strand, within ABIE40_RS25310 at 1237.293 kb on - strand, within ABIE40_RS25310 at 1237.490 kb on + strand, within ABIE40_RS25310 at 1237.490 kb on + strand, within ABIE40_RS25310 at 1237.491 kb on - strand, within ABIE40_RS25310 at 1237.491 kb on - strand, within ABIE40_RS25310 at 1237.491 kb on - strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.580 kb on + strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.581 kb on - strand, within ABIE40_RS25310 at 1237.665 kb on + strand at 1237.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) remove 1,234,753 + ABIE40_RS25295 0.85 -0.3 1,234,753 + ABIE40_RS25295 0.85 -0.3 1,234,754 - ABIE40_RS25295 0.85 -0.3 1,234,754 - ABIE40_RS25295 0.85 -0.4 1,234,754 - ABIE40_RS25295 0.85 -0.5 1,234,754 - ABIE40_RS25295 0.85 +0.0 1,234,820 + -0.3 1,234,872 + -0.2 1,234,872 + +0.6 1,234,873 - -0.7 1,234,873 - +0.7 1,234,873 - -1.2 1,234,873 - -1.1 1,234,873 - -0.3 1,234,873 - -0.6 1,234,873 - +0.1 1,234,873 - -1.1 1,234,873 - +0.1 1,234,873 - +0.2 1,234,873 - -0.3 1,234,926 + -0.0 1,234,926 + -1.8 1,234,927 - -0.2 1,234,927 - -0.9 1,234,927 - +0.8 1,234,930 - -0.2 1,234,973 + -0.1 1,234,973 + -0.4 1,234,974 - -1.3 1,235,020 - ABIE40_RS25300 0.15 +0.4 1,235,028 + ABIE40_RS25300 0.16 -1.0 1,235,028 + ABIE40_RS25300 0.16 -0.3 1,235,164 - ABIE40_RS25300 0.34 +0.3 1,235,164 - ABIE40_RS25300 0.34 -0.6 1,235,249 - ABIE40_RS25300 0.46 -0.8 1,235,381 - ABIE40_RS25300 0.64 +0.3 1,235,381 - ABIE40_RS25300 0.64 +1.8 1,235,388 + ABIE40_RS25300 0.65 +1.7 1,235,388 + ABIE40_RS25300 0.65 +1.0 1,235,388 + ABIE40_RS25300 0.65 +2.0 1,235,388 + ABIE40_RS25300 0.65 -0.0 1,235,388 + ABIE40_RS25300 0.65 +0.7 1,235,463 + ABIE40_RS25300 0.75 +0.6 1,235,463 + ABIE40_RS25300 0.75 -0.0 1,235,463 + ABIE40_RS25300 0.75 +0.2 1,235,614 + -1.4 1,235,615 - -1.1 1,235,615 - +0.1 1,235,684 - -0.4 1,235,726 + -0.9 1,235,727 - -0.9 1,235,983 - ABIE40_RS25305 0.33 -0.1 1,236,186 + ABIE40_RS25305 0.53 +1.5 1,236,186 + ABIE40_RS25305 0.53 +0.0 1,236,188 + ABIE40_RS25305 0.53 -0.2 1,236,188 + ABIE40_RS25305 0.53 -0.9 1,236,188 + ABIE40_RS25305 0.53 -0.0 1,236,188 + ABIE40_RS25305 0.53 -1.8 1,236,188 + ABIE40_RS25305 0.53 +0.3 1,236,189 - ABIE40_RS25305 0.53 -0.9 1,236,189 - ABIE40_RS25305 0.53 +1.2 1,236,189 - ABIE40_RS25305 0.53 +0.6 1,236,189 - ABIE40_RS25305 0.53 +0.0 1,236,189 - ABIE40_RS25305 0.53 -0.2 1,236,381 - ABIE40_RS25305 0.72 -0.6 1,236,537 + ABIE40_RS25305 0.87 -0.7 1,236,538 - ABIE40_RS25305 0.87 -0.1 1,236,658 - -0.0 1,236,674 + -0.3 1,236,674 + +1.0 1,236,707 + -0.6 1,236,708 - -0.3 1,236,708 - -1.1 1,236,740 + +1.1 1,236,740 + -1.5 1,236,740 + -0.5 1,236,830 + ABIE40_RS25310 0.10 -0.1 1,236,867 - ABIE40_RS25310 0.14 -1.1 1,236,867 - ABIE40_RS25310 0.14 +0.6 1,236,878 + ABIE40_RS25310 0.15 -0.5 1,236,878 + ABIE40_RS25310 0.15 +0.1 1,236,987 + ABIE40_RS25310 0.27 +0.2 1,237,109 - ABIE40_RS25310 0.40 +1.1 1,237,130 - ABIE40_RS25310 0.42 +0.2 1,237,263 - ABIE40_RS25310 0.56 +0.6 1,237,292 + ABIE40_RS25310 0.59 -0.5 1,237,292 + ABIE40_RS25310 0.59 -0.5 1,237,292 + ABIE40_RS25310 0.59 +0.0 1,237,292 + ABIE40_RS25310 0.59 -1.2 1,237,293 - ABIE40_RS25310 0.59 -0.7 1,237,293 - ABIE40_RS25310 0.59 -0.4 1,237,490 + ABIE40_RS25310 0.80 +0.1 1,237,490 + ABIE40_RS25310 0.80 +0.3 1,237,491 - ABIE40_RS25310 0.80 +0.2 1,237,491 - ABIE40_RS25310 0.80 -0.4 1,237,491 - ABIE40_RS25310 0.80 -3.1 1,237,580 + ABIE40_RS25310 0.89 +0.2 1,237,580 + ABIE40_RS25310 0.89 +0.6 1,237,580 + ABIE40_RS25310 0.89 +0.5 1,237,580 + ABIE40_RS25310 0.89 +0.1 1,237,580 + ABIE40_RS25310 0.89 +0.7 1,237,580 + ABIE40_RS25310 0.89 +0.5 1,237,580 + ABIE40_RS25310 0.89 +0.9 1,237,580 + ABIE40_RS25310 0.89 -0.9 1,237,581 - ABIE40_RS25310 0.89 +1.5 1,237,581 - ABIE40_RS25310 0.89 -1.4 1,237,581 - ABIE40_RS25310 0.89 +0.1 1,237,581 - ABIE40_RS25310 0.89 +0.7 1,237,581 - ABIE40_RS25310 0.89 +0.8 1,237,581 - ABIE40_RS25310 0.89 +0.3 1,237,581 - ABIE40_RS25310 0.89 +1.0 1,237,581 - ABIE40_RS25310 0.89 -1.2 1,237,665 + +0.5 1,237,665 + -0.5
Or see this region's nucleotide sequence