Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05140

Experiment: Adenosine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adenosine (C)
1,003,246	+				-1.7
1,003,246	+				-0.9
1,003,264	+				+0.3
1,003,264	+				-0.1
1,003,264	+				+1.3
1,003,265	-				-1.8
1,003,265	-				+0.1
1,003,295	-				+0.1
1,003,306	+				+0.4
1,003,376	+		ABIE40_RS05130	0.21	-0.8
1,003,376	+		ABIE40_RS05130	0.21	-1.4
1,003,376	+		ABIE40_RS05130	0.21	+1.4
1,003,376	+		ABIE40_RS05130	0.21	+2.0
1,003,376	+		ABIE40_RS05130	0.21	-0.5
1,003,377	-		ABIE40_RS05130	0.21	-3.4
1,003,377	-		ABIE40_RS05130	0.21	-0.2
1,003,377	-		ABIE40_RS05130	0.21	+0.9
1,003,377	-		ABIE40_RS05130	0.21	+0.1
1,003,377	-		ABIE40_RS05130	0.21	+0.1
1,003,377	-		ABIE40_RS05130	0.21	-0.7
1,003,378	+		ABIE40_RS05130	0.22	-1.2
1,003,378	+		ABIE40_RS05130	0.22	-1.4
1,003,378	+		ABIE40_RS05130	0.22	-0.8
1,003,379	-		ABIE40_RS05130	0.22	-0.1
1,003,383	+		ABIE40_RS05130	0.23	+0.0
1,003,383	+		ABIE40_RS05130	0.23	-0.2
1,003,440	+		ABIE40_RS05130	0.40	-0.3
1,003,440	+		ABIE40_RS05130	0.40	-0.6
1,003,440	+		ABIE40_RS05130	0.40	-2.4
1,003,440	+		ABIE40_RS05130	0.40	+2.0
1,003,440	+		ABIE40_RS05130	0.40	-0.1
1,003,440	+		ABIE40_RS05130	0.40	-0.1
1,003,440	+		ABIE40_RS05130	0.40	+1.6
1,003,448	+		ABIE40_RS05130	0.43	+0.0
1,003,448	+		ABIE40_RS05130	0.43	-0.7
1,003,448	+		ABIE40_RS05130	0.43	+0.6
1,003,469	+		ABIE40_RS05130	0.49	+0.7
1,003,469	+		ABIE40_RS05130	0.49	-0.1
1,003,470	-		ABIE40_RS05130	0.49	+0.1
1,003,478	-		ABIE40_RS05130	0.52	-0.6
1,003,525	+		ABIE40_RS05130	0.66	+0.5
1,003,526	-		ABIE40_RS05130	0.66	+0.4
1,003,526	-		ABIE40_RS05130	0.66	-0.6
1,003,550	+		ABIE40_RS05130	0.74	-0.2
1,003,550	+		ABIE40_RS05130	0.74	+0.4
1,003,551	-		ABIE40_RS05130	0.74	+0.6
1,003,551	-		ABIE40_RS05130	0.74	-1.4
1,003,597	+		ABIE40_RS05130	0.88	+0.4
1,003,597	+		ABIE40_RS05130	0.88	-0.9
1,003,598	-		ABIE40_RS05130	0.88	-0.6
1,003,598	-		ABIE40_RS05130	0.88	+0.1
1,003,760	+				-0.7
1,003,764	+				+0.3
1,003,764	+				-2.6
1,003,765	-				-0.2
1,003,794	+				+0.3
1,003,795	-				-0.4
1,003,863	+				-1.1
1,003,863	+				+0.2
1,003,985	+		ABIE40_RS05135	0.47	-1.5
1,003,985	+		ABIE40_RS05135	0.47	-1.5
1,003,985	+		ABIE40_RS05135	0.47	-1.6
1,004,349	+		ABIE40_RS05140	0.19	-2.8
1,004,350	-		ABIE40_RS05140	0.19	-0.4
1,004,350	-		ABIE40_RS05140	0.19	-0.5
1,004,352	-		ABIE40_RS05140	0.19	-1.2
1,004,352	-		ABIE40_RS05140	0.19	-0.4
1,004,445	+		ABIE40_RS05140	0.32	-0.2
1,004,445	+		ABIE40_RS05140	0.32	-0.1
1,004,445	+		ABIE40_RS05140	0.32	-0.8
1,004,445	+		ABIE40_RS05140	0.32	+1.8
1,004,446	-		ABIE40_RS05140	0.32	-2.7
1,004,446	-		ABIE40_RS05140	0.32	-1.0
1,004,448	-		ABIE40_RS05140	0.32	+0.3
1,004,448	-		ABIE40_RS05140	0.32	-0.4
1,004,468	+		ABIE40_RS05140	0.35	-1.2
1,004,468	+		ABIE40_RS05140	0.35	-0.2
1,004,468	+		ABIE40_RS05140	0.35	-0.9
1,004,469	-		ABIE40_RS05140	0.35	+0.7
1,004,608	+		ABIE40_RS05140	0.54	-0.6
1,004,609	+		ABIE40_RS05140	0.54	-0.7
1,004,609	+		ABIE40_RS05140	0.54	-1.6
1,004,609	+		ABIE40_RS05140	0.54	-0.7
1,004,610	-		ABIE40_RS05140	0.55	-0.5
1,004,610	-		ABIE40_RS05140	0.55	-0.6
1,004,610	-		ABIE40_RS05140	0.55	+0.1
1,004,610	-		ABIE40_RS05140	0.55	-0.3
1,004,931	+				+1.2
1,004,931	+				-1.1
1,004,931	+				-0.3
1,004,931	+				+0.4
1,004,931	+				-0.5
1,004,931	+				+0.7
1,004,931	+				-1.4
1,004,931	+				-0.6
1,004,931	+				-0.5
1,004,932	-				-0.7
1,004,932	-				-0.3
1,004,932	-				-0.8
1,004,932	-				-0.3
1,004,932	-				+0.2
1,004,932	-				-1.7
1,004,932	-				-0.9
1,004,932	-				+0.1
1,004,932	-				+0.2
1,005,001	+				+0.1
1,005,021	+				+3.4
1,005,021	+				+0.1
1,005,088	+				-1.3
1,005,088	+				+0.9
1,005,088	+				+1.7
1,005,088	+				-2.5
1,005,088	+				+0.9
1,005,088	+				-0.4
1,005,088	+				-0.3
1,005,088	+				-0.1
1,005,088	+				-1.5
1,005,088	+				+0.9
1,005,088	+				+1.6
1,005,088	+				+0.8
1,005,088	+				-0.2
1,005,088	+				-0.2
1,005,088	+				-0.9
1,005,088	+				-0.0
1,005,088	+				-2.4
1,005,089	-				+0.3
1,005,089	-				-1.8
1,005,089	-				-0.1
1,005,089	-				-0.2
1,005,089	-				+0.1
1,005,089	-				-0.3
1,005,089	-				-2.8
1,005,089	-				+0.0
1,005,089	-				-1.9
1,005,089	-				-0.7
1,005,089	-				-1.0
1,005,089	-				+0.1
1,005,089	-				+0.6
1,005,089	-				+0.5
1,005,089	-				-2.1
1,005,089	-				-0.6
1,005,089	-				-0.6
1,005,089	-				-0.9
1,005,097	+				+0.9
1,005,098	-				+0.8
1,005,098	-				-0.1
1,005,224	+		ABIE40_RS05145	0.15	-0.7
1,005,225	-		ABIE40_RS05145	0.15	-1.0
1,005,225	-		ABIE40_RS05145	0.15	-1.4
1,005,225	-		ABIE40_RS05145	0.15	+0.2
1,005,225	-		ABIE40_RS05145	0.15	-0.4
1,005,225	-		ABIE40_RS05145	0.15	+1.2
1,005,225	-		ABIE40_RS05145	0.15	-0.3
1,005,293	+		ABIE40_RS05145	0.22	+0.8
1,005,293	+		ABIE40_RS05145	0.22	+0.9
1,005,293	+		ABIE40_RS05145	0.22	+0.1
1,005,294	-		ABIE40_RS05145	0.22	-2.1
1,005,294	-		ABIE40_RS05145	0.22	-0.7
1,005,294	-		ABIE40_RS05145	0.22	+0.0
1,005,294	-		ABIE40_RS05145	0.22	-0.3
1,005,294	-		ABIE40_RS05145	0.22	+1.0
1,005,309	-		ABIE40_RS05145	0.24	+0.6
1,005,331	-		ABIE40_RS05145	0.27	-3.0
1,005,374	+		ABIE40_RS05145	0.31	-1.6
1,005,374	+		ABIE40_RS05145	0.31	+0.2
1,005,375	-		ABIE40_RS05145	0.31	-2.9
1,005,375	-		ABIE40_RS05145	0.31	-0.6
1,005,585	-		ABIE40_RS05145	0.54	-0.4
1,005,585	-		ABIE40_RS05145	0.54	-1.5
1,005,677	-		ABIE40_RS05145	0.64	+0.5
1,005,795	-		ABIE40_RS05145	0.77	-0.0
1,005,912	-				+0.6