Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28425

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28415 and ABID97_RS28420 are separated by 0 nucleotidesABID97_RS28420 and ABID97_RS28425 are separated by 176 nucleotidesABID97_RS28425 and ABID97_RS28430 are separated by 10 nucleotides ABID97_RS28415: ABID97_RS28415 - CoA transferase, at 602,812 to 604,002 _RS28415 ABID97_RS28420: ABID97_RS28420 - tripartite tricarboxylate transporter substrate binding protein, at 604,003 to 604,821 _RS28420 ABID97_RS28425: ABID97_RS28425 - SDR family NAD(P)-dependent oxidoreductase, at 604,998 to 605,777 _RS28425 ABID97_RS28430: ABID97_RS28430 - thiolase family protein, at 605,788 to 606,924 _RS28430 Position (kb) 604 605 606Strain fitness (log2 ratio) -1 0 1at 604.102 kb on - strand, within ABID97_RS28420at 604.745 kb on + strandat 604.999 kb on + strandat 605.059 kb on + strandat 605.293 kb on + strand, within ABID97_RS28425at 605.802 kb on + strandat 605.803 kb on - strandat 606.081 kb on - strand, within ABID97_RS28430at 606.454 kb on - strand, within ABID97_RS28430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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604,102 - ABID97_RS28420 0.12 +0.4
604,745 + -0.2
604,999 + +0.3
605,059 + -0.2
605,293 + ABID97_RS28425 0.38 -0.1
605,802 + -1.2
605,803 - +0.0
606,081 - ABID97_RS28430 0.26 -0.1
606,454 - ABID97_RS28430 0.59 -0.1

Or see this region's nucleotide sequence