Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18875

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18870 and ABID97_RS18875 are separated by 8 nucleotidesABID97_RS18875 and ABID97_RS18880 are separated by 43 nucleotides ABID97_RS18870: ABID97_RS18870 - branched-chain amino acid ABC transporter permease, at 3,886,107 to 3,887,132 _RS18870 ABID97_RS18875: ABID97_RS18875 - branched-chain amino acid ABC transporter permease, at 3,887,141 to 3,887,983 _RS18875 ABID97_RS18880: ABID97_RS18880 - ABC transporter substrate-binding protein, at 3,888,027 to 3,889,229 _RS18880 Position (kb) 3887 3888Strain fitness (log2 ratio) -1 0 1at 3886.276 kb on + strand, within ABID97_RS18870at 3886.276 kb on + strand, within ABID97_RS18870at 3886.276 kb on + strand, within ABID97_RS18870at 3886.288 kb on + strand, within ABID97_RS18870at 3886.489 kb on + strand, within ABID97_RS18870at 3886.490 kb on - strand, within ABID97_RS18870at 3886.757 kb on - strand, within ABID97_RS18870at 3886.937 kb on - strand, within ABID97_RS18870at 3886.987 kb on + strand, within ABID97_RS18870at 3886.987 kb on + strand, within ABID97_RS18870at 3886.988 kb on - strand, within ABID97_RS18870at 3886.988 kb on - strand, within ABID97_RS18870at 3887.748 kb on + strand, within ABID97_RS18875at 3887.880 kb on + strand, within ABID97_RS18875at 3887.881 kb on - strand, within ABID97_RS18875at 3888.136 kb on + strandat 3888.331 kb on + strand, within ABID97_RS18880at 3888.344 kb on - strand, within ABID97_RS18880at 3888.442 kb on + strand, within ABID97_RS18880at 3888.703 kb on + strand, within ABID97_RS18880at 3888.704 kb on - strand, within ABID97_RS18880at 3888.805 kb on + strand, within ABID97_RS18880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,886,276 + ABID97_RS18870 0.16 -0.7
3,886,276 + ABID97_RS18870 0.16 +0.1
3,886,276 + ABID97_RS18870 0.16 -0.2
3,886,288 + ABID97_RS18870 0.18 -0.0
3,886,489 + ABID97_RS18870 0.37 -0.3
3,886,490 - ABID97_RS18870 0.37 -0.6
3,886,757 - ABID97_RS18870 0.63 -0.2
3,886,937 - ABID97_RS18870 0.81 +0.3
3,886,987 + ABID97_RS18870 0.86 -0.3
3,886,987 + ABID97_RS18870 0.86 -0.6
3,886,988 - ABID97_RS18870 0.86 -0.1
3,886,988 - ABID97_RS18870 0.86 +0.0
3,887,748 + ABID97_RS18875 0.72 -0.5
3,887,880 + ABID97_RS18875 0.88 -0.2
3,887,881 - ABID97_RS18875 0.88 -0.6
3,888,136 + +0.1
3,888,331 + ABID97_RS18880 0.25 -0.2
3,888,344 - ABID97_RS18880 0.26 -0.3
3,888,442 + ABID97_RS18880 0.34 +0.2
3,888,703 + ABID97_RS18880 0.56 +0.0
3,888,704 - ABID97_RS18880 0.56 -0.2
3,888,805 + ABID97_RS18880 0.65 +0.1

Or see this region's nucleotide sequence