Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17870

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17860 and ABID97_RS17865 are separated by 16 nucleotidesABID97_RS17865 and ABID97_RS17870 are separated by 8 nucleotidesABID97_RS17870 and ABID97_RS17875 are separated by 62 nucleotides ABID97_RS17860: ABID97_RS17860 - peptidylprolyl isomerase, at 3,687,217 to 3,687,729 _RS17860 ABID97_RS17865: ABID97_RS17865 - UDP-2,3-diacylglucosamine diphosphatase, at 3,687,746 to 3,688,528 _RS17865 ABID97_RS17870: ABID97_RS17870 - M90 family metallopeptidase, at 3,688,537 to 3,689,328 _RS17870 ABID97_RS17875: ABID97_RS17875 - DUF349 domain-containing protein, at 3,689,391 to 3,692,264 _RS17875 Position (kb) 3688 3689 3690Strain fitness (log2 ratio) -1 0 1at 3688.527 kb on - strandat 3688.796 kb on - strand, within ABID97_RS17870at 3688.796 kb on - strand, within ABID97_RS17870at 3688.871 kb on + strand, within ABID97_RS17870at 3688.871 kb on + strand, within ABID97_RS17870at 3688.871 kb on + strand, within ABID97_RS17870at 3688.872 kb on - strand, within ABID97_RS17870at 3688.882 kb on + strand, within ABID97_RS17870at 3688.883 kb on - strand, within ABID97_RS17870at 3688.883 kb on - strand, within ABID97_RS17870at 3688.979 kb on - strand, within ABID97_RS17870at 3689.125 kb on + strand, within ABID97_RS17870at 3689.194 kb on + strand, within ABID97_RS17870at 3689.242 kb on + strand, within ABID97_RS17870at 3689.392 kb on + strandat 3689.392 kb on + strandat 3689.392 kb on + strandat 3689.392 kb on + strandat 3689.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,688,527 - -0.2
3,688,796 - ABID97_RS17870 0.33 -0.4
3,688,796 - ABID97_RS17870 0.33 -0.4
3,688,871 + ABID97_RS17870 0.42 -0.3
3,688,871 + ABID97_RS17870 0.42 +0.4
3,688,871 + ABID97_RS17870 0.42 +1.6
3,688,872 - ABID97_RS17870 0.42 -1.0
3,688,882 + ABID97_RS17870 0.44 -0.2
3,688,883 - ABID97_RS17870 0.44 +0.1
3,688,883 - ABID97_RS17870 0.44 -0.3
3,688,979 - ABID97_RS17870 0.56 -0.4
3,689,125 + ABID97_RS17870 0.74 -0.1
3,689,194 + ABID97_RS17870 0.83 -0.1
3,689,242 + ABID97_RS17870 0.89 +0.1
3,689,392 + -0.0
3,689,392 + +0.1
3,689,392 + +0.9
3,689,392 + +0.2
3,689,393 - +0.1

Or see this region's nucleotide sequence