Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13205

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13195 and ABID97_RS13200 are separated by 19 nucleotidesABID97_RS13200 and ABID97_RS13205 are separated by 12 nucleotidesABID97_RS13205 and ABID97_RS13210 overlap by 4 nucleotides ABID97_RS13195: ABID97_RS13195 - maleylacetate reductase, at 2,748,615 to 2,749,691 _RS13195 ABID97_RS13200: ABID97_RS13200 - intradiol ring-cleavage dioxygenase, at 2,749,711 to 2,750,559 _RS13200 ABID97_RS13205: ABID97_RS13205 - tripartite tricarboxylate transporter substrate binding protein, at 2,750,572 to 2,751,534 _RS13205 ABID97_RS13210: ABID97_RS13210 - FAD-dependent oxidoreductase, at 2,751,531 to 2,753,258 _RS13210 Position (kb) 2750 2751 2752Strain fitness (log2 ratio) -2 -1 0 1 2at 2749.769 kb on + strandat 2749.769 kb on + strandat 2751.173 kb on + strand, within ABID97_RS13205at 2751.174 kb on - strand, within ABID97_RS13205at 2751.379 kb on + strand, within ABID97_RS13205at 2751.380 kb on - strand, within ABID97_RS13205at 2751.380 kb on - strand, within ABID97_RS13205at 2751.677 kb on - strandat 2751.883 kb on + strand, within ABID97_RS13210at 2751.883 kb on + strand, within ABID97_RS13210at 2752.468 kb on + strand, within ABID97_RS13210at 2752.528 kb on + strand, within ABID97_RS13210at 2752.529 kb on - strand, within ABID97_RS13210

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,749,769 + -1.9
2,749,769 + -0.4
2,751,173 + ABID97_RS13205 0.62 +1.5
2,751,174 - ABID97_RS13205 0.63 -0.1
2,751,379 + ABID97_RS13205 0.84 +0.4
2,751,380 - ABID97_RS13205 0.84 +1.8
2,751,380 - ABID97_RS13205 0.84 +1.0
2,751,677 - +0.8
2,751,883 + ABID97_RS13210 0.20 +0.5
2,751,883 + ABID97_RS13210 0.20 +0.2
2,752,468 + ABID97_RS13210 0.54 -0.8
2,752,528 + ABID97_RS13210 0.58 +0.3
2,752,529 - ABID97_RS13210 0.58 +2.1

Or see this region's nucleotide sequence