Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS17975

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS17965 and RPSI07_RS17970 are separated by 102 nucleotidesRPSI07_RS17970 and RPSI07_RS17975 are separated by 86 nucleotidesRPSI07_RS17975 and RPSI07_RS17980 are separated by 388 nucleotides RPSI07_RS17965: RPSI07_RS17965 - oxidoreductase, at 2,235,924 to 2,236,997 _RS17965 RPSI07_RS17970: RPSI07_RS17970 - Fe(2+)-trafficking protein, at 2,237,100 to 2,237,375 _RS17970 RPSI07_RS17975: RPSI07_RS17975 - methyl-accepting chemotaxis protein, at 2,237,462 to 2,239,006 _RS17975 RPSI07_RS17980: RPSI07_RS17980 - dihydropyrimidinase, at 2,239,395 to 2,240,873 _RS17980 Position (kb) 2237 2238 2239 2240Strain fitness (log2 ratio) -2 -1 0 1at 2236.638 kb on + strand, within RPSI07_RS17965at 2236.638 kb on + strand, within RPSI07_RS17965at 2236.638 kb on + strand, within RPSI07_RS17965at 2236.638 kb on + strand, within RPSI07_RS17965at 2236.639 kb on - strand, within RPSI07_RS17965at 2237.040 kb on + strandat 2237.316 kb on + strand, within RPSI07_RS17970at 2238.936 kb on + strandat 2238.937 kb on - strandat 2238.937 kb on - strandat 2239.127 kb on + strandat 2239.128 kb on - strandat 2239.139 kb on + strandat 2239.174 kb on + strandat 2239.174 kb on + strandat 2239.477 kb on + strandat 2239.478 kb on - strandat 2239.478 kb on - strandat 2239.478 kb on - strandat 2239.927 kb on + strand, within RPSI07_RS17980

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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2,236,638 + RPSI07_RS17965 0.66 +1.0
2,236,638 + RPSI07_RS17965 0.66 +1.2
2,236,638 + RPSI07_RS17965 0.66 -0.3
2,236,638 + RPSI07_RS17965 0.66 -0.2
2,236,639 - RPSI07_RS17965 0.67 +0.0
2,237,040 + -1.1
2,237,316 + RPSI07_RS17970 0.78 -2.0
2,238,936 + +0.2
2,238,937 - -1.0
2,238,937 - -0.2
2,239,127 + +0.2
2,239,128 - +0.9
2,239,139 + -0.4
2,239,174 + -1.0
2,239,174 + -0.2
2,239,477 + -0.4
2,239,478 - -0.5
2,239,478 - +0.8
2,239,478 - -0.9
2,239,927 + RPSI07_RS17980 0.36 +0.2

Or see this region's nucleotide sequence