Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS15480 and RPSI07_RS15485 are separated by 179 nucleotides RPSI07_RS15485 and RPSI07_RS25075 are separated by 25 nucleotides RPSI07_RS25075 and RPSI07_RS15500 are separated by 64 nucleotides
RPSI07_RS15480: RPSI07_RS15480 - AcrB/AcrD/AcrF family protein, at 1,636,520 to 1,639,642
_RS15480
RPSI07_RS15485: RPSI07_RS15485 - IS5 family transposase, at 1,639,822 to 1,641,000
_RS15485
RPSI07_RS25075: RPSI07_RS25075 - IS5/IS1182 family transposase, at 1,641,026 to 1,641,636
_RS25075
RPSI07_RS15500: RPSI07_RS15500 - DDE domain-containing protein, at 1,641,701 to 1,642,863
_RS15500
Position (kb)
1639
1640
1641
1642 Strain fitness (log2 ratio)
-2
-1
0
1 at 1638.868 kb on + strand, within RPSI07_RS15480 at 1639.481 kb on + strand at 1639.481 kb on + strand at 1639.545 kb on - strand at 1639.641 kb on - strand at 1639.777 kb on - strand at 1639.777 kb on - strand at 1639.777 kb on - strand at 1639.777 kb on - strand at 1639.777 kb on - strand at 1639.779 kb on - strand at 1639.779 kb on - strand at 1639.779 kb on - strand at 1639.779 kb on - strand at 1641.639 kb on + strand at 1641.639 kb on + strand at 1641.640 kb on - strand at 1641.773 kb on + strand at 1641.774 kb on - strand at 1641.774 kb on - strand at 1641.967 kb on + strand, within RPSI07_RS15500 at 1642.000 kb on + strand, within RPSI07_RS15500
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 1,638,868 + RPSI07_RS15480 0.75 -0.2 1,639,481 + +0.2 1,639,481 + -0.1 1,639,545 - -1.0 1,639,641 - +0.6 1,639,777 - -0.6 1,639,777 - -0.3 1,639,777 - -0.4 1,639,777 - -0.0 1,639,777 - +0.9 1,639,779 - -0.4 1,639,779 - +0.4 1,639,779 - -0.7 1,639,779 - -0.2 1,641,639 + -0.7 1,641,639 + +0.5 1,641,640 - -0.1 1,641,773 + -2.1 1,641,774 - +0.4 1,641,774 - -0.1 1,641,967 + RPSI07_RS15500 0.23 +0.5 1,642,000 + RPSI07_RS15500 0.26 -1.0
Or see this region's nucleotide sequence