Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15485

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS15480 and RPSI07_RS15485 are separated by 179 nucleotidesRPSI07_RS15485 and RPSI07_RS25075 are separated by 25 nucleotidesRPSI07_RS25075 and RPSI07_RS15500 are separated by 64 nucleotides RPSI07_RS15480: RPSI07_RS15480 - AcrB/AcrD/AcrF family protein, at 1,636,520 to 1,639,642 _RS15480 RPSI07_RS15485: RPSI07_RS15485 - IS5 family transposase, at 1,639,822 to 1,641,000 _RS15485 RPSI07_RS25075: RPSI07_RS25075 - IS5/IS1182 family transposase, at 1,641,026 to 1,641,636 _RS25075 RPSI07_RS15500: RPSI07_RS15500 - DDE domain-containing protein, at 1,641,701 to 1,642,863 _RS15500 Position (kb) 1639 1640 1641 1642Strain fitness (log2 ratio) -2 -1 0 1at 1638.868 kb on + strand, within RPSI07_RS15480at 1639.481 kb on + strandat 1639.481 kb on + strandat 1639.545 kb on - strandat 1639.641 kb on - strandat 1639.777 kb on - strandat 1639.777 kb on - strandat 1639.777 kb on - strandat 1639.777 kb on - strandat 1639.777 kb on - strandat 1639.779 kb on - strandat 1639.779 kb on - strandat 1639.779 kb on - strandat 1639.779 kb on - strandat 1641.639 kb on + strandat 1641.639 kb on + strandat 1641.640 kb on - strandat 1641.773 kb on + strandat 1641.774 kb on - strandat 1641.774 kb on - strandat 1641.967 kb on + strand, within RPSI07_RS15500at 1642.000 kb on + strand, within RPSI07_RS15500

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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1,638,868 + RPSI07_RS15480 0.75 -0.2
1,639,481 + +0.2
1,639,481 + -0.1
1,639,545 - -1.0
1,639,641 - +0.6
1,639,777 - -0.6
1,639,777 - -0.3
1,639,777 - -0.4
1,639,777 - -0.0
1,639,777 - +0.9
1,639,779 - -0.4
1,639,779 - +0.4
1,639,779 - -0.7
1,639,779 - -0.2
1,641,639 + -0.7
1,641,639 + +0.5
1,641,640 - -0.1
1,641,773 + -2.1
1,641,774 - +0.4
1,641,774 - -0.1
1,641,967 + RPSI07_RS15500 0.23 +0.5
1,642,000 + RPSI07_RS15500 0.26 -1.0

Or see this region's nucleotide sequence