Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS09600

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS09590 and RPSI07_RS09595 are separated by 130 nucleotidesRPSI07_RS09595 and RPSI07_RS09600 are separated by 215 nucleotidesRPSI07_RS09600 and RPSI07_RS09605 are separated by 400 nucleotidesRPSI07_RS09605 and RPSI07_RS09610 are separated by 33 nucleotides RPSI07_RS09590: RPSI07_RS09590 - DUF4440 domain-containing protein, at 378,201 to 378,596 _RS09590 RPSI07_RS09595: RPSI07_RS09595 - DUF4437 domain-containing protein, at 378,727 to 379,215 _RS09595 RPSI07_RS09600: RPSI07_RS09600 - N-acetyltransferase, at 379,431 to 380,126 _RS09600 RPSI07_RS09605: RPSI07_RS09605 - NAD(P)H dehydrogenase, at 380,527 to 381,075 _RS09605 RPSI07_RS09610: RPSI07_RS09610 - glutathione-regulated potassium-efflux system protein KefC, at 381,109 to 383,007 _RS09610 Position (kb) 379 380 381Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 378.637 kb on + strandat 378.637 kb on + strandat 378.637 kb on + strandat 378.637 kb on + strandat 378.637 kb on + strandat 378.637 kb on + strandat 378.638 kb on - strandat 378.638 kb on - strandat 378.638 kb on - strandat 378.638 kb on - strandat 378.640 kb on + strandat 378.640 kb on + strandat 378.640 kb on + strandat 378.640 kb on + strandat 378.640 kb on + strandat 378.641 kb on - strandat 378.641 kb on - strandat 378.641 kb on - strandat 378.641 kb on - strandat 378.728 kb on + strandat 378.729 kb on - strandat 378.730 kb on - strandat 378.761 kb on + strandat 378.761 kb on + strandat 378.761 kb on + strandat 378.761 kb on + strandat 378.761 kb on + strandat 378.761 kb on + strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.762 kb on - strandat 378.824 kb on + strand, within RPSI07_RS09595at 378.824 kb on + strand, within RPSI07_RS09595at 378.824 kb on + strand, within RPSI07_RS09595at 378.825 kb on - strand, within RPSI07_RS09595at 378.825 kb on - strand, within RPSI07_RS09595at 378.825 kb on - strand, within RPSI07_RS09595at 378.825 kb on - strand, within RPSI07_RS09595at 378.849 kb on - strand, within RPSI07_RS09595at 378.914 kb on + strand, within RPSI07_RS09595at 378.914 kb on + strand, within RPSI07_RS09595at 378.977 kb on + strand, within RPSI07_RS09595at 379.034 kb on + strand, within RPSI07_RS09595at 379.304 kb on + strandat 379.305 kb on - strandat 379.346 kb on - strandat 379.346 kb on - strandat 379.517 kb on - strand, within RPSI07_RS09600at 379.517 kb on - strand, within RPSI07_RS09600at 379.591 kb on + strand, within RPSI07_RS09600at 379.592 kb on - strand, within RPSI07_RS09600at 379.592 kb on - strand, within RPSI07_RS09600at 379.610 kb on - strand, within RPSI07_RS09600at 379.615 kb on + strand, within RPSI07_RS09600at 379.616 kb on - strand, within RPSI07_RS09600at 379.684 kb on + strand, within RPSI07_RS09600at 379.684 kb on + strand, within RPSI07_RS09600at 379.684 kb on + strand, within RPSI07_RS09600at 379.684 kb on + strand, within RPSI07_RS09600at 379.684 kb on + strand, within RPSI07_RS09600at 379.685 kb on - strand, within RPSI07_RS09600at 379.685 kb on - strand, within RPSI07_RS09600at 379.823 kb on - strand, within RPSI07_RS09600at 379.864 kb on + strand, within RPSI07_RS09600at 379.865 kb on - strand, within RPSI07_RS09600at 379.865 kb on - strand, within RPSI07_RS09600at 379.865 kb on - strand, within RPSI07_RS09600at 379.909 kb on + strand, within RPSI07_RS09600at 379.910 kb on - strand, within RPSI07_RS09600at 380.242 kb on + strandat 380.243 kb on - strandat 380.243 kb on - strandat 380.554 kb on + strandat 380.554 kb on + strandat 380.554 kb on + strandat 380.555 kb on - strandat 380.555 kb on - strandat 380.555 kb on - strandat 380.555 kb on - strandat 380.644 kb on + strand, within RPSI07_RS09605at 380.645 kb on - strand, within RPSI07_RS09605at 380.645 kb on - strand, within RPSI07_RS09605at 380.653 kb on + strand, within RPSI07_RS09605at 380.740 kb on + strand, within RPSI07_RS09605at 380.740 kb on + strand, within RPSI07_RS09605at 380.741 kb on - strand, within RPSI07_RS09605at 380.741 kb on - strand, within RPSI07_RS09605at 380.781 kb on - strand, within RPSI07_RS09605at 380.781 kb on - strand, within RPSI07_RS09605at 380.781 kb on - strand, within RPSI07_RS09605at 380.800 kb on + strand, within RPSI07_RS09605at 380.801 kb on - strand, within RPSI07_RS09605at 380.875 kb on + strand, within RPSI07_RS09605at 380.875 kb on + strand, within RPSI07_RS09605at 380.875 kb on + strand, within RPSI07_RS09605at 380.876 kb on - strand, within RPSI07_RS09605at 380.876 kb on - strand, within RPSI07_RS09605at 380.876 kb on - strand, within RPSI07_RS09605at 380.876 kb on - strand, within RPSI07_RS09605

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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378,637 + -0.6
378,637 + +0.3
378,637 + +0.0
378,637 + +1.2
378,637 + +0.4
378,637 + +1.0
378,638 - -1.0
378,638 - +1.7
378,638 - -0.7
378,638 - -1.0
378,640 + +1.5
378,640 + +0.1
378,640 + +0.4
378,640 + +1.2
378,640 + +0.8
378,641 - -0.7
378,641 - -0.0
378,641 - -1.9
378,641 - -0.6
378,728 + -0.5
378,729 - +0.2
378,730 - +1.6
378,761 + -1.1
378,761 + -1.0
378,761 + +0.9
378,761 + +2.5
378,761 + -0.4
378,761 + -0.1
378,762 - -2.2
378,762 - -1.2
378,762 - -1.7
378,762 - -0.5
378,762 - +0.1
378,762 - +0.0
378,762 - -0.5
378,762 - +1.1
378,824 + RPSI07_RS09595 0.20 -0.6
378,824 + RPSI07_RS09595 0.20 +1.1
378,824 + RPSI07_RS09595 0.20 -2.8
378,825 - RPSI07_RS09595 0.20 -0.5
378,825 - RPSI07_RS09595 0.20 +2.4
378,825 - RPSI07_RS09595 0.20 +1.4
378,825 - RPSI07_RS09595 0.20 +1.1
378,849 - RPSI07_RS09595 0.25 +1.2
378,914 + RPSI07_RS09595 0.38 +0.4
378,914 + RPSI07_RS09595 0.38 -0.4
378,977 + RPSI07_RS09595 0.51 +0.2
379,034 + RPSI07_RS09595 0.63 +0.8
379,304 + -0.6
379,305 - -0.2
379,346 - -0.5
379,346 - -1.0
379,517 - RPSI07_RS09600 0.12 +1.5
379,517 - RPSI07_RS09600 0.12 +0.5
379,591 + RPSI07_RS09600 0.23 +1.1
379,592 - RPSI07_RS09600 0.23 -2.3
379,592 - RPSI07_RS09600 0.23 +1.8
379,610 - RPSI07_RS09600 0.26 -0.3
379,615 + RPSI07_RS09600 0.26 +0.5
379,616 - RPSI07_RS09600 0.27 +0.2
379,684 + RPSI07_RS09600 0.36 +1.5
379,684 + RPSI07_RS09600 0.36 +0.3
379,684 + RPSI07_RS09600 0.36 +2.3
379,684 + RPSI07_RS09600 0.36 -1.6
379,684 + RPSI07_RS09600 0.36 +1.4
379,685 - RPSI07_RS09600 0.36 +0.4
379,685 - RPSI07_RS09600 0.36 +1.7
379,823 - RPSI07_RS09600 0.56 -0.9
379,864 + RPSI07_RS09600 0.62 -1.8
379,865 - RPSI07_RS09600 0.62 +1.2
379,865 - RPSI07_RS09600 0.62 +1.3
379,865 - RPSI07_RS09600 0.62 -0.5
379,909 + RPSI07_RS09600 0.69 -0.1
379,910 - RPSI07_RS09600 0.69 +0.5
380,242 + -0.1
380,243 - +0.1
380,243 - +0.4
380,554 + +1.2
380,554 + -0.4
380,554 + -0.6
380,555 - +0.1
380,555 - +1.4
380,555 - +0.3
380,555 - +0.7
380,644 + RPSI07_RS09605 0.21 +0.8
380,645 - RPSI07_RS09605 0.21 +0.0
380,645 - RPSI07_RS09605 0.21 +0.1
380,653 + RPSI07_RS09605 0.23 -0.1
380,740 + RPSI07_RS09605 0.39 -0.4
380,740 + RPSI07_RS09605 0.39 -1.1
380,741 - RPSI07_RS09605 0.39 +0.7
380,741 - RPSI07_RS09605 0.39 +1.1
380,781 - RPSI07_RS09605 0.46 -0.5
380,781 - RPSI07_RS09605 0.46 +0.1
380,781 - RPSI07_RS09605 0.46 +0.2
380,800 + RPSI07_RS09605 0.50 -1.4
380,801 - RPSI07_RS09605 0.50 +1.2
380,875 + RPSI07_RS09605 0.63 -0.3
380,875 + RPSI07_RS09605 0.63 -0.4
380,875 + RPSI07_RS09605 0.63 -1.7
380,876 - RPSI07_RS09605 0.64 -1.5
380,876 - RPSI07_RS09605 0.64 -0.1
380,876 - RPSI07_RS09605 0.64 +0.9
380,876 - RPSI07_RS09605 0.64 +0.3

Or see this region's nucleotide sequence