Strain Fitness in Pseudomonas putida KT2440 around PP_5025

Experiment: Acetate Carbon Source (5mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5024 and PP_5025 are separated by 293 nucleotidesPP_5025 and PP_5026 overlap by 8 nucleotides PP_5024: PP_5024 - Amino acid ABC transporter, periplasmic amino acid-binding protein, at 5,723,298 to 5,724,098 _5024 PP_5025: PP_5025 - Glucans biosynthesis glucosyltransferase H, at 5,724,392 to 5,726,965 _5025 PP_5026: PP_5026 - Glucans biosynthesis protein G, at 5,726,958 to 5,728,637 _5026 Position (kb) 5724 5725 5726 5727Strain fitness (log2 ratio) -2 -1 0 1 2at 5723.414 kb on - strand, within PP_5024at 5723.449 kb on + strand, within PP_5024at 5723.516 kb on - strand, within PP_5024at 5723.527 kb on + strand, within PP_5024at 5723.597 kb on - strand, within PP_5024at 5723.665 kb on + strand, within PP_5024at 5723.689 kb on + strand, within PP_5024at 5723.689 kb on + strand, within PP_5024at 5723.689 kb on + strand, within PP_5024at 5723.690 kb on - strand, within PP_5024at 5723.854 kb on + strand, within PP_5024at 5723.968 kb on + strand, within PP_5024at 5723.968 kb on + strand, within PP_5024at 5723.968 kb on + strand, within PP_5024at 5723.969 kb on - strand, within PP_5024at 5723.969 kb on - strand, within PP_5024at 5723.969 kb on - strand, within PP_5024at 5724.086 kb on - strandat 5724.133 kb on + strandat 5724.134 kb on - strandat 5724.134 kb on - strandat 5724.134 kb on - strandat 5724.134 kb on - strandat 5724.185 kb on + strandat 5724.185 kb on + strandat 5724.281 kb on + strandat 5724.282 kb on - strandat 5724.282 kb on - strandat 5724.295 kb on + strandat 5724.296 kb on - strandat 5724.305 kb on - strandat 5724.571 kb on + strandat 5724.759 kb on + strand, within PP_5025at 5724.759 kb on + strand, within PP_5025at 5724.760 kb on - strand, within PP_5025at 5724.796 kb on - strand, within PP_5025at 5725.101 kb on - strand, within PP_5025at 5725.318 kb on - strand, within PP_5025at 5725.318 kb on - strand, within PP_5025at 5725.318 kb on - strand, within PP_5025at 5725.318 kb on - strand, within PP_5025at 5725.398 kb on + strand, within PP_5025at 5725.398 kb on + strand, within PP_5025at 5725.543 kb on - strand, within PP_5025at 5725.543 kb on - strand, within PP_5025at 5725.560 kb on + strand, within PP_5025at 5725.773 kb on + strand, within PP_5025at 5725.806 kb on + strand, within PP_5025at 5725.807 kb on - strand, within PP_5025at 5725.807 kb on - strand, within PP_5025at 5725.807 kb on - strand, within PP_5025at 5725.938 kb on + strand, within PP_5025at 5725.938 kb on + strand, within PP_5025at 5725.939 kb on - strand, within PP_5025at 5725.939 kb on - strand, within PP_5025at 5725.939 kb on - strand, within PP_5025at 5725.939 kb on - strand, within PP_5025at 5725.944 kb on + strand, within PP_5025at 5725.944 kb on + strand, within PP_5025at 5726.020 kb on - strand, within PP_5025at 5726.284 kb on - strand, within PP_5025at 5726.284 kb on - strand, within PP_5025at 5726.397 kb on + strand, within PP_5025at 5726.476 kb on - strand, within PP_5025at 5726.496 kb on + strand, within PP_5025at 5726.497 kb on - strand, within PP_5025at 5726.544 kb on + strand, within PP_5025at 5726.856 kb on - strandat 5726.856 kb on - strandat 5726.856 kb on - strandat 5726.856 kb on - strandat 5726.912 kb on + strandat 5726.912 kb on + strandat 5726.913 kb on - strandat 5726.913 kb on - strandat 5726.913 kb on - strandat 5726.913 kb on - strandat 5726.913 kb on - strandat 5726.913 kb on - strandat 5726.913 kb on - strandat 5726.925 kb on + strandat 5726.926 kb on - strandat 5726.980 kb on + strandat 5726.980 kb on + strandat 5726.981 kb on - strandat 5726.981 kb on - strandat 5726.981 kb on - strandat 5727.260 kb on + strand, within PP_5026at 5727.261 kb on - strand, within PP_5026at 5727.262 kb on + strand, within PP_5026at 5727.262 kb on + strand, within PP_5026at 5727.263 kb on - strand, within PP_5026at 5727.566 kb on + strand, within PP_5026at 5727.566 kb on + strand, within PP_5026at 5727.567 kb on - strand, within PP_5026at 5727.667 kb on + strand, within PP_5026at 5727.668 kb on - strand, within PP_5026at 5727.668 kb on - strand, within PP_5026at 5727.668 kb on - strand, within PP_5026at 5727.853 kb on + strand, within PP_5026at 5727.854 kb on - strand, within PP_5026at 5727.892 kb on + strand, within PP_5026at 5727.897 kb on - strand, within PP_5026

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetate Carbon Source (5mM)
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5,723,414 - PP_5024 0.14 -0.7
5,723,449 + PP_5024 0.19 -0.7
5,723,516 - PP_5024 0.27 -0.4
5,723,527 + PP_5024 0.29 +0.6
5,723,597 - PP_5024 0.37 -0.4
5,723,665 + PP_5024 0.46 -0.0
5,723,689 + PP_5024 0.49 +0.2
5,723,689 + PP_5024 0.49 +1.7
5,723,689 + PP_5024 0.49 -0.4
5,723,690 - PP_5024 0.49 +0.7
5,723,854 + PP_5024 0.69 -1.0
5,723,968 + PP_5024 0.84 -0.5
5,723,968 + PP_5024 0.84 +0.4
5,723,968 + PP_5024 0.84 +0.2
5,723,969 - PP_5024 0.84 -0.0
5,723,969 - PP_5024 0.84 +1.0
5,723,969 - PP_5024 0.84 -0.0
5,724,086 - +0.0
5,724,133 + +1.4
5,724,134 - -0.3
5,724,134 - +1.3
5,724,134 - +0.8
5,724,134 - +0.8
5,724,185 + +0.0
5,724,185 + +0.2
5,724,281 + +0.4
5,724,282 - +0.7
5,724,282 - -0.8
5,724,295 + +0.8
5,724,296 - -0.5
5,724,305 - -0.7
5,724,571 + -1.1
5,724,759 + PP_5025 0.14 -0.6
5,724,759 + PP_5025 0.14 +0.9
5,724,760 - PP_5025 0.14 +0.9
5,724,796 - PP_5025 0.16 -2.1
5,725,101 - PP_5025 0.28 +0.2
5,725,318 - PP_5025 0.36 +0.6
5,725,318 - PP_5025 0.36 -0.8
5,725,318 - PP_5025 0.36 +0.2
5,725,318 - PP_5025 0.36 +1.0
5,725,398 + PP_5025 0.39 +0.5
5,725,398 + PP_5025 0.39 +0.6
5,725,543 - PP_5025 0.45 +0.6
5,725,543 - PP_5025 0.45 -0.4
5,725,560 + PP_5025 0.45 +1.7
5,725,773 + PP_5025 0.54 +1.0
5,725,806 + PP_5025 0.55 -1.1
5,725,807 - PP_5025 0.55 +0.0
5,725,807 - PP_5025 0.55 +1.7
5,725,807 - PP_5025 0.55 +0.8
5,725,938 + PP_5025 0.60 -0.7
5,725,938 + PP_5025 0.60 +0.0
5,725,939 - PP_5025 0.60 +0.2
5,725,939 - PP_5025 0.60 +1.4
5,725,939 - PP_5025 0.60 -0.6
5,725,939 - PP_5025 0.60 -0.0
5,725,944 + PP_5025 0.60 -0.6
5,725,944 + PP_5025 0.60 -0.3
5,726,020 - PP_5025 0.63 +0.4
5,726,284 - PP_5025 0.74 +0.0
5,726,284 - PP_5025 0.74 -0.0
5,726,397 + PP_5025 0.78 +0.2
5,726,476 - PP_5025 0.81 +0.3
5,726,496 + PP_5025 0.82 +0.4
5,726,497 - PP_5025 0.82 +0.8
5,726,544 + PP_5025 0.84 -0.4
5,726,856 - +0.7
5,726,856 - -0.1
5,726,856 - -0.0
5,726,856 - +0.6
5,726,912 + -0.9
5,726,912 + +0.2
5,726,913 - -0.5
5,726,913 - +0.1
5,726,913 - -0.3
5,726,913 - -0.1
5,726,913 - +0.0
5,726,913 - +2.2
5,726,913 - -1.9
5,726,925 + +0.6
5,726,926 - -0.2
5,726,980 + +1.6
5,726,980 + -0.7
5,726,981 - -0.6
5,726,981 - -0.1
5,726,981 - +0.4
5,727,260 + PP_5026 0.18 -0.4
5,727,261 - PP_5026 0.18 -0.3
5,727,262 + PP_5026 0.18 -0.1
5,727,262 + PP_5026 0.18 +0.1
5,727,263 - PP_5026 0.18 -0.0
5,727,566 + PP_5026 0.36 -0.7
5,727,566 + PP_5026 0.36 +0.0
5,727,567 - PP_5026 0.36 -0.5
5,727,667 + PP_5026 0.42 +0.0
5,727,668 - PP_5026 0.42 +0.9
5,727,668 - PP_5026 0.42 -0.7
5,727,668 - PP_5026 0.42 +0.4
5,727,853 + PP_5026 0.53 +0.9
5,727,854 - PP_5026 0.53 +0.0
5,727,892 + PP_5026 0.56 +0.9
5,727,897 - PP_5026 0.56 -0.1

Or see this region's nucleotide sequence