Strain Fitness in Pseudomonas putida KT2440 around PP_4623

Experiment: Acetate Carbon Source (5mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4621 and PP_4622 are separated by 112 nucleotidesPP_4622 and PP_4623 overlap by 70 nucleotidesPP_4623 and PP_4624 are separated by 255 nucleotides PP_4621: PP_4621 - Homogentisate 1,2-dioxygenase, at 5,243,180 to 5,244,481 _4621 PP_4622: PP_4622 - Hmg transcriptional repressor, at 5,244,594 to 5,245,427 _4622 PP_4623: PP_4623 - conserved protein of unknown function, at 5,245,358 to 5,248,660 _4623 PP_4624: PP_4624 - putative hydrolase, alpha/beta fold family, at 5,248,916 to 5,249,821 _4624 Position (kb) 5245 5246 5247 5248 5249Strain fitness (log2 ratio) -1 0 1 2at 5244.363 kb on + strandat 5244.529 kb on + strandat 5244.529 kb on + strandat 5244.556 kb on + strandat 5244.556 kb on + strandat 5244.556 kb on + strandat 5244.556 kb on + strandat 5244.557 kb on - strandat 5244.557 kb on - strandat 5244.557 kb on - strandat 5244.557 kb on - strandat 5244.557 kb on - strandat 5244.558 kb on + strandat 5244.703 kb on + strand, within PP_4622at 5244.753 kb on + strand, within PP_4622at 5244.964 kb on + strand, within PP_4622at 5244.965 kb on - strand, within PP_4622at 5244.965 kb on - strand, within PP_4622at 5244.965 kb on - strand, within PP_4622at 5245.062 kb on + strand, within PP_4622at 5245.135 kb on - strand, within PP_4622at 5245.391 kb on + strandat 5245.392 kb on - strandat 5245.440 kb on + strandat 5245.477 kb on - strandat 5245.477 kb on - strandat 5245.554 kb on + strandat 5245.555 kb on - strandat 5245.555 kb on - strandat 5245.555 kb on - strandat 5245.758 kb on - strand, within PP_4623at 5245.789 kb on + strand, within PP_4623at 5245.843 kb on + strand, within PP_4623at 5245.843 kb on + strand, within PP_4623at 5245.843 kb on + strand, within PP_4623at 5245.843 kb on + strand, within PP_4623at 5245.843 kb on + strand, within PP_4623at 5245.844 kb on - strand, within PP_4623at 5245.844 kb on - strand, within PP_4623at 5245.844 kb on - strand, within PP_4623at 5245.893 kb on - strand, within PP_4623at 5246.025 kb on + strand, within PP_4623at 5246.110 kb on - strand, within PP_4623at 5246.110 kb on - strand, within PP_4623at 5246.154 kb on + strand, within PP_4623at 5246.154 kb on + strand, within PP_4623at 5246.155 kb on - strand, within PP_4623at 5246.358 kb on + strand, within PP_4623at 5246.359 kb on - strand, within PP_4623at 5246.381 kb on + strand, within PP_4623at 5246.382 kb on - strand, within PP_4623at 5246.407 kb on - strand, within PP_4623at 5246.436 kb on + strandat 5246.436 kb on + strand, within PP_4623at 5246.436 kb on + strand, within PP_4623at 5246.436 kb on + strand, within PP_4623at 5246.436 kb on + strand, within PP_4623at 5246.437 kb on - strand, within PP_4623at 5246.437 kb on - strand, within PP_4623at 5246.437 kb on - strand, within PP_4623at 5246.437 kb on - strand, within PP_4623at 5246.470 kb on + strand, within PP_4623at 5246.470 kb on + strand, within PP_4623at 5246.470 kb on + strand, within PP_4623at 5246.518 kb on - strand, within PP_4623at 5246.518 kb on - strand, within PP_4623at 5246.520 kb on + strand, within PP_4623at 5246.520 kb on + strand, within PP_4623at 5246.521 kb on - strand, within PP_4623at 5246.521 kb on - strand, within PP_4623at 5246.588 kb on + strand, within PP_4623at 5246.588 kb on + strand, within PP_4623at 5246.588 kb on + strand, within PP_4623at 5246.588 kb on + strand, within PP_4623at 5246.589 kb on - strand, within PP_4623at 5246.700 kb on + strand, within PP_4623at 5246.700 kb on + strand, within PP_4623at 5246.700 kb on + strand, within PP_4623at 5246.701 kb on - strand, within PP_4623at 5246.701 kb on - strand, within PP_4623at 5246.735 kb on - strand, within PP_4623at 5246.735 kb on - strand, within PP_4623at 5246.994 kb on - strand, within PP_4623at 5247.013 kb on + strand, within PP_4623at 5247.014 kb on - strand, within PP_4623at 5247.084 kb on + strand, within PP_4623at 5247.084 kb on + strand, within PP_4623at 5247.085 kb on - strand, within PP_4623at 5247.093 kb on + strand, within PP_4623at 5247.093 kb on + strand, within PP_4623at 5247.093 kb on + strand, within PP_4623at 5247.094 kb on - strand, within PP_4623at 5247.322 kb on - strand, within PP_4623at 5247.322 kb on - strand, within PP_4623at 5247.322 kb on - strand, within PP_4623at 5247.322 kb on - strand, within PP_4623at 5247.328 kb on + strand, within PP_4623at 5247.345 kb on + strand, within PP_4623at 5247.345 kb on + strand, within PP_4623at 5247.346 kb on - strand, within PP_4623at 5247.385 kb on + strand, within PP_4623at 5247.385 kb on + strand, within PP_4623at 5247.391 kb on + strand, within PP_4623at 5247.392 kb on - strand, within PP_4623at 5247.392 kb on - strand, within PP_4623at 5247.454 kb on - strand, within PP_4623at 5247.534 kb on - strand, within PP_4623at 5247.534 kb on - strand, within PP_4623at 5247.891 kb on + strand, within PP_4623at 5247.892 kb on - strand, within PP_4623at 5248.071 kb on + strand, within PP_4623at 5248.071 kb on + strand, within PP_4623at 5248.071 kb on + strand, within PP_4623at 5248.071 kb on + strand, within PP_4623at 5248.072 kb on - strand, within PP_4623at 5248.072 kb on - strand, within PP_4623at 5248.170 kb on + strand, within PP_4623at 5248.170 kb on + strand, within PP_4623at 5248.170 kb on + strand, within PP_4623at 5248.171 kb on - strand, within PP_4623at 5248.171 kb on - strand, within PP_4623at 5248.171 kb on - strand, within PP_4623at 5248.171 kb on - strand, within PP_4623at 5248.171 kb on - strand, within PP_4623at 5248.240 kb on + strand, within PP_4623at 5248.240 kb on + strand, within PP_4623at 5248.297 kb on + strand, within PP_4623at 5248.313 kb on + strand, within PP_4623at 5248.459 kb on + strandat 5248.652 kb on - strandat 5248.678 kb on + strandat 5248.678 kb on + strandat 5248.679 kb on - strandat 5248.679 kb on - strandat 5248.705 kb on + strandat 5248.731 kb on - strandat 5248.801 kb on - strandat 5248.941 kb on + strandat 5248.974 kb on + strandat 5248.975 kb on - strandat 5248.975 kb on - strandat 5249.005 kb on + strandat 5249.005 kb on + strandat 5249.030 kb on + strand, within PP_4624at 5249.031 kb on - strand, within PP_4624at 5249.137 kb on + strand, within PP_4624at 5249.137 kb on + strand, within PP_4624at 5249.137 kb on + strand, within PP_4624at 5249.137 kb on + strand, within PP_4624at 5249.138 kb on - strand, within PP_4624at 5249.190 kb on + strand, within PP_4624at 5249.289 kb on + strand, within PP_4624at 5249.289 kb on + strand, within PP_4624at 5249.289 kb on + strand, within PP_4624at 5249.289 kb on + strand, within PP_4624at 5249.290 kb on - strand, within PP_4624at 5249.305 kb on + strand, within PP_4624at 5249.305 kb on + strand, within PP_4624at 5249.305 kb on + strand, within PP_4624at 5249.305 kb on + strand, within PP_4624at 5249.305 kb on + strand, within PP_4624at 5249.381 kb on + strand, within PP_4624at 5249.381 kb on + strand, within PP_4624at 5249.381 kb on + strand, within PP_4624at 5249.382 kb on - strand, within PP_4624at 5249.382 kb on - strand, within PP_4624at 5249.382 kb on - strand, within PP_4624at 5249.382 kb on - strand, within PP_4624at 5249.580 kb on + strand, within PP_4624at 5249.580 kb on + strand, within PP_4624at 5249.581 kb on - strand, within PP_4624at 5249.581 kb on - strand, within PP_4624

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acetate Carbon Source (5mM)
remove
5,244,363 + -0.3
5,244,529 + -0.2
5,244,529 + +1.0
5,244,556 + +0.4
5,244,556 + +0.5
5,244,556 + +0.4
5,244,556 + +0.4
5,244,557 - +0.2
5,244,557 - -0.6
5,244,557 - +0.7
5,244,557 - +0.3
5,244,557 - +0.6
5,244,558 + +0.5
5,244,703 + PP_4622 0.13 -0.0
5,244,753 + PP_4622 0.19 -0.2
5,244,964 + PP_4622 0.44 -0.2
5,244,965 - PP_4622 0.44 +0.2
5,244,965 - PP_4622 0.44 +0.8
5,244,965 - PP_4622 0.44 +0.2
5,245,062 + PP_4622 0.56 +0.3
5,245,135 - PP_4622 0.65 -0.6
5,245,391 + -1.6
5,245,392 - +2.1
5,245,440 + -0.3
5,245,477 - -1.5
5,245,477 - +0.2
5,245,554 + +0.3
5,245,555 - +0.2
5,245,555 - -0.1
5,245,555 - +0.7
5,245,758 - PP_4623 0.12 +0.3
5,245,789 + PP_4623 0.13 +0.9
5,245,843 + PP_4623 0.15 +1.5
5,245,843 + PP_4623 0.15 -1.4
5,245,843 + PP_4623 0.15 +0.4
5,245,843 + PP_4623 0.15 +0.2
5,245,843 + PP_4623 0.15 -0.6
5,245,844 - PP_4623 0.15 +0.1
5,245,844 - PP_4623 0.15 +0.1
5,245,844 - PP_4623 0.15 -0.8
5,245,893 - PP_4623 0.16 +0.8
5,246,025 + PP_4623 0.20 -0.3
5,246,110 - PP_4623 0.23 -0.6
5,246,110 - PP_4623 0.23 +2.5
5,246,154 + PP_4623 0.24 +0.1
5,246,154 + PP_4623 0.24 -0.6
5,246,155 - PP_4623 0.24 +1.4
5,246,358 + PP_4623 0.30 +0.4
5,246,359 - PP_4623 0.30 -0.3
5,246,381 + PP_4623 0.31 -0.2
5,246,382 - PP_4623 0.31 -0.8
5,246,407 - PP_4623 0.32 -0.7
5,246,436 + +2.2
5,246,436 + PP_4623 0.33 +0.9
5,246,436 + PP_4623 0.33 +0.0
5,246,436 + PP_4623 0.33 +0.9
5,246,436 + PP_4623 0.33 +1.1
5,246,437 - PP_4623 0.33 -0.3
5,246,437 - PP_4623 0.33 -1.6
5,246,437 - PP_4623 0.33 -0.7
5,246,437 - PP_4623 0.33 +0.5
5,246,470 + PP_4623 0.34 +0.2
5,246,470 + PP_4623 0.34 -0.4
5,246,470 + PP_4623 0.34 +1.6
5,246,518 - PP_4623 0.35 -0.4
5,246,518 - PP_4623 0.35 -0.7
5,246,520 + PP_4623 0.35 -0.6
5,246,520 + PP_4623 0.35 -0.0
5,246,521 - PP_4623 0.35 -0.4
5,246,521 - PP_4623 0.35 +0.7
5,246,588 + PP_4623 0.37 +0.0
5,246,588 + PP_4623 0.37 -1.2
5,246,588 + PP_4623 0.37 +0.2
5,246,588 + PP_4623 0.37 +0.3
5,246,589 - PP_4623 0.37 +0.0
5,246,700 + PP_4623 0.41 +1.2
5,246,700 + PP_4623 0.41 +0.6
5,246,700 + PP_4623 0.41 +0.2
5,246,701 - PP_4623 0.41 -1.1
5,246,701 - PP_4623 0.41 -0.3
5,246,735 - PP_4623 0.42 -0.5
5,246,735 - PP_4623 0.42 +0.2
5,246,994 - PP_4623 0.50 -1.2
5,247,013 + PP_4623 0.50 +0.2
5,247,014 - PP_4623 0.50 -0.4
5,247,084 + PP_4623 0.52 -1.7
5,247,084 + PP_4623 0.52 +0.4
5,247,085 - PP_4623 0.52 +0.4
5,247,093 + PP_4623 0.53 -1.6
5,247,093 + PP_4623 0.53 +0.8
5,247,093 + PP_4623 0.53 -1.4
5,247,094 - PP_4623 0.53 -0.9
5,247,322 - PP_4623 0.59 -1.2
5,247,322 - PP_4623 0.59 -0.2
5,247,322 - PP_4623 0.59 +0.7
5,247,322 - PP_4623 0.59 -0.4
5,247,328 + PP_4623 0.60 +0.5
5,247,345 + PP_4623 0.60 +0.4
5,247,345 + PP_4623 0.60 -0.8
5,247,346 - PP_4623 0.60 -0.2
5,247,385 + PP_4623 0.61 -0.7
5,247,385 + PP_4623 0.61 +0.2
5,247,391 + PP_4623 0.62 -0.5
5,247,392 - PP_4623 0.62 +0.2
5,247,392 - PP_4623 0.62 +0.8
5,247,454 - PP_4623 0.63 +0.2
5,247,534 - PP_4623 0.66 +0.2
5,247,534 - PP_4623 0.66 -0.9
5,247,891 + PP_4623 0.77 -1.1
5,247,892 - PP_4623 0.77 -0.8
5,248,071 + PP_4623 0.82 -1.7
5,248,071 + PP_4623 0.82 +1.0
5,248,071 + PP_4623 0.82 +1.2
5,248,071 + PP_4623 0.82 -1.1
5,248,072 - PP_4623 0.82 +0.8
5,248,072 - PP_4623 0.82 +0.5
5,248,170 + PP_4623 0.85 +0.0
5,248,170 + PP_4623 0.85 -0.4
5,248,170 + PP_4623 0.85 +0.1
5,248,171 - PP_4623 0.85 +0.0
5,248,171 - PP_4623 0.85 -0.4
5,248,171 - PP_4623 0.85 -0.5
5,248,171 - PP_4623 0.85 +0.0
5,248,171 - PP_4623 0.85 -0.3
5,248,240 + PP_4623 0.87 +0.4
5,248,240 + PP_4623 0.87 +0.1
5,248,297 + PP_4623 0.89 -0.5
5,248,313 + PP_4623 0.89 -0.1
5,248,459 + -0.1
5,248,652 - +0.1
5,248,678 + +0.5
5,248,678 + -0.3
5,248,679 - +0.6
5,248,679 - -0.7
5,248,705 + -0.4
5,248,731 - +0.1
5,248,801 - +0.2
5,248,941 + -0.3
5,248,974 + -1.1
5,248,975 - +0.7
5,248,975 - -0.5
5,249,005 + -1.0
5,249,005 + -0.4
5,249,030 + PP_4624 0.13 -1.0
5,249,031 - PP_4624 0.13 -0.1
5,249,137 + PP_4624 0.24 -0.5
5,249,137 + PP_4624 0.24 +0.6
5,249,137 + PP_4624 0.24 -0.9
5,249,137 + PP_4624 0.24 +0.7
5,249,138 - PP_4624 0.25 +0.3
5,249,190 + PP_4624 0.30 +0.4
5,249,289 + PP_4624 0.41 +0.8
5,249,289 + PP_4624 0.41 -0.1
5,249,289 + PP_4624 0.41 -0.3
5,249,289 + PP_4624 0.41 -0.3
5,249,290 - PP_4624 0.41 +0.1
5,249,305 + PP_4624 0.43 +0.0
5,249,305 + PP_4624 0.43 -0.6
5,249,305 + PP_4624 0.43 +0.1
5,249,305 + PP_4624 0.43 -0.9
5,249,305 + PP_4624 0.43 -0.2
5,249,381 + PP_4624 0.51 +1.1
5,249,381 + PP_4624 0.51 -0.7
5,249,381 + PP_4624 0.51 +0.5
5,249,382 - PP_4624 0.51 -0.3
5,249,382 - PP_4624 0.51 -0.8
5,249,382 - PP_4624 0.51 +0.9
5,249,382 - PP_4624 0.51 -0.0
5,249,580 + PP_4624 0.73 -1.3
5,249,580 + PP_4624 0.73 +0.3
5,249,581 - PP_4624 0.73 +0.2
5,249,581 - PP_4624 0.73 +0.4

Or see this region's nucleotide sequence