Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22955

Experiment: Adenosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22950 and ABIE40_RS22955 are separated by 2 nucleotidesABIE40_RS22955 and ABIE40_RS22960 are separated by 109 nucleotidesABIE40_RS22960 and ABIE40_RS22965 are separated by 3 nucleotides ABIE40_RS22950: ABIE40_RS22950 - LLM class flavin-dependent oxidoreductase, at 737,096 to 738,169 _RS22950 ABIE40_RS22955: ABIE40_RS22955 - DsbA family protein, at 738,172 to 738,768 _RS22955 ABIE40_RS22960: ABIE40_RS22960 - Lrp/AsnC family transcriptional regulator, at 738,878 to 739,369 _RS22960 ABIE40_RS22965: ABIE40_RS22965 - LLM class flavin-dependent oxidoreductase, at 739,373 to 740,443 _RS22965 Position (kb) 738 739Strain fitness (log2 ratio) -2 -1 0 1 2at 737.316 kb on + strand, within ABIE40_RS22950at 737.316 kb on + strand, within ABIE40_RS22950at 737.316 kb on + strand, within ABIE40_RS22950at 737.317 kb on - strand, within ABIE40_RS22950at 737.317 kb on - strand, within ABIE40_RS22950at 737.546 kb on + strand, within ABIE40_RS22950at 737.546 kb on + strand, within ABIE40_RS22950at 737.547 kb on - strand, within ABIE40_RS22950at 737.547 kb on - strand, within ABIE40_RS22950at 737.642 kb on + strand, within ABIE40_RS22950at 737.642 kb on + strand, within ABIE40_RS22950at 737.643 kb on - strand, within ABIE40_RS22950at 737.643 kb on - strand, within ABIE40_RS22950at 737.772 kb on - strand, within ABIE40_RS22950at 737.861 kb on + strand, within ABIE40_RS22950at 737.861 kb on + strand, within ABIE40_RS22950at 737.870 kb on + strand, within ABIE40_RS22950at 737.871 kb on - strand, within ABIE40_RS22950at 737.973 kb on + strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.976 kb on - strand, within ABIE40_RS22950at 738.026 kb on + strand, within ABIE40_RS22950at 738.026 kb on + strand, within ABIE40_RS22950at 738.027 kb on - strand, within ABIE40_RS22950at 738.061 kb on - strand, within ABIE40_RS22950at 738.167 kb on + strandat 738.167 kb on + strandat 738.168 kb on - strandat 738.168 kb on - strandat 738.168 kb on - strandat 738.191 kb on - strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.220 kb on + strandat 738.221 kb on - strandat 738.221 kb on - strandat 738.222 kb on + strandat 738.272 kb on + strand, within ABIE40_RS22955at 738.272 kb on + strand, within ABIE40_RS22955at 738.272 kb on + strand, within ABIE40_RS22955at 738.272 kb on + strand, within ABIE40_RS22955at 738.273 kb on - strand, within ABIE40_RS22955at 738.463 kb on + strand, within ABIE40_RS22955at 738.514 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.694 kb on + strand, within ABIE40_RS22955at 738.695 kb on - strand, within ABIE40_RS22955at 738.695 kb on - strand, within ABIE40_RS22955at 738.695 kb on - strand, within ABIE40_RS22955at 738.709 kb on + strandat 738.709 kb on + strandat 738.709 kb on + strandat 738.709 kb on + strandat 738.918 kb on + strandat 738.924 kb on - strandat 739.012 kb on - strand, within ABIE40_RS22960at 739.023 kb on + strand, within ABIE40_RS22960at 739.059 kb on + strand, within ABIE40_RS22960at 739.084 kb on - strand, within ABIE40_RS22960at 739.428 kb on + strandat 739.560 kb on + strand, within ABIE40_RS22965at 739.561 kb on + strand, within ABIE40_RS22965at 739.561 kb on + strand, within ABIE40_RS22965at 739.561 kb on + strand, within ABIE40_RS22965at 739.563 kb on + strand, within ABIE40_RS22965at 739.563 kb on + strand, within ABIE40_RS22965at 739.563 kb on + strand, within ABIE40_RS22965at 739.563 kb on + strand, within ABIE40_RS22965at 739.564 kb on - strand, within ABIE40_RS22965at 739.564 kb on - strand, within ABIE40_RS22965at 739.564 kb on - strand, within ABIE40_RS22965at 739.564 kb on - strand, within ABIE40_RS22965

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (C)
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737,316 + ABIE40_RS22950 0.20 +0.8
737,316 + ABIE40_RS22950 0.20 +0.3
737,316 + ABIE40_RS22950 0.20 +0.4
737,317 - ABIE40_RS22950 0.21 -0.1
737,317 - ABIE40_RS22950 0.21 +0.4
737,546 + ABIE40_RS22950 0.42 -0.0
737,546 + ABIE40_RS22950 0.42 +1.2
737,547 - ABIE40_RS22950 0.42 +0.4
737,547 - ABIE40_RS22950 0.42 -2.4
737,642 + ABIE40_RS22950 0.51 -0.8
737,642 + ABIE40_RS22950 0.51 +0.6
737,643 - ABIE40_RS22950 0.51 +0.3
737,643 - ABIE40_RS22950 0.51 +1.4
737,772 - ABIE40_RS22950 0.63 +0.4
737,861 + ABIE40_RS22950 0.71 +0.4
737,861 + ABIE40_RS22950 0.71 +1.4
737,870 + ABIE40_RS22950 0.72 +0.6
737,871 - ABIE40_RS22950 0.72 +1.8
737,973 + ABIE40_RS22950 0.82 +0.0
737,974 - ABIE40_RS22950 0.82 +0.8
737,974 - ABIE40_RS22950 0.82 +0.7
737,974 - ABIE40_RS22950 0.82 +1.4
737,976 - ABIE40_RS22950 0.82 +0.1
738,026 + ABIE40_RS22950 0.87 +0.7
738,026 + ABIE40_RS22950 0.87 +0.4
738,027 - ABIE40_RS22950 0.87 +0.3
738,061 - ABIE40_RS22950 0.90 -0.8
738,167 + +2.6
738,167 + +2.2
738,168 - +0.0
738,168 - -0.2
738,168 - +0.8
738,191 - +1.2
738,220 + -0.8
738,220 + +1.0
738,220 + -1.2
738,220 + +2.0
738,220 + -1.0
738,220 + +0.1
738,220 + -0.6
738,220 + -0.0
738,220 + +0.6
738,220 + +0.9
738,220 + +0.3
738,220 + +0.4
738,221 - -0.2
738,221 - +0.7
738,222 + -0.1
738,272 + ABIE40_RS22955 0.17 -1.1
738,272 + ABIE40_RS22955 0.17 +0.9
738,272 + ABIE40_RS22955 0.17 -0.6
738,272 + ABIE40_RS22955 0.17 -2.0
738,273 - ABIE40_RS22955 0.17 +0.6
738,463 + ABIE40_RS22955 0.49 -1.0
738,514 + ABIE40_RS22955 0.57 +0.9
738,694 + ABIE40_RS22955 0.87 -0.1
738,694 + ABIE40_RS22955 0.87 +0.9
738,694 + ABIE40_RS22955 0.87 -1.7
738,694 + ABIE40_RS22955 0.87 +0.0
738,694 + ABIE40_RS22955 0.87 +0.5
738,695 - ABIE40_RS22955 0.88 -1.6
738,695 - ABIE40_RS22955 0.88 +0.0
738,695 - ABIE40_RS22955 0.88 -0.4
738,709 + -0.6
738,709 + +1.0
738,709 + +2.2
738,709 + +0.3
738,918 + +2.7
738,924 - -0.5
739,012 - ABIE40_RS22960 0.27 -1.4
739,023 + ABIE40_RS22960 0.29 -0.4
739,059 + ABIE40_RS22960 0.37 +0.1
739,084 - ABIE40_RS22960 0.42 +0.1
739,428 + +1.0
739,560 + ABIE40_RS22965 0.17 +0.3
739,561 + ABIE40_RS22965 0.18 -0.7
739,561 + ABIE40_RS22965 0.18 +0.9
739,561 + ABIE40_RS22965 0.18 +0.2
739,563 + ABIE40_RS22965 0.18 -2.2
739,563 + ABIE40_RS22965 0.18 -0.0
739,563 + ABIE40_RS22965 0.18 -0.8
739,563 + ABIE40_RS22965 0.18 +0.4
739,564 - ABIE40_RS22965 0.18 +1.1
739,564 - ABIE40_RS22965 0.18 -0.5
739,564 - ABIE40_RS22965 0.18 +1.9
739,564 - ABIE40_RS22965 0.18 +2.3

Or see this region's nucleotide sequence