Experiment: Adenosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21210 and ABIE40_RS21215 are separated by 35 nucleotides ABIE40_RS21215 and ABIE40_RS21220 overlap by 4 nucleotides ABIE40_RS21220 and ABIE40_RS21225 overlap by 4 nucleotides
ABIE40_RS21210: ABIE40_RS21210 - nitrate ABC transporter substrate-binding protein, at 356,674 to 357,654
_RS21210
ABIE40_RS21215: ABIE40_RS21215 - ABC transporter substrate-binding protein, at 357,690 to 358,574
_RS21215
ABIE40_RS21220: ABIE40_RS21220 - amino acid ABC transporter permease, at 358,571 to 359,527
_RS21220
ABIE40_RS21225: ABIE40_RS21225 - amino acid ABC transporter ATP-binding protein, at 359,524 to 360,303
_RS21225
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 356.713 kb on + strand at 356.713 kb on + strand at 356.713 kb on + strand at 356.713 kb on + strand at 356.713 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.815 kb on + strand, within ABIE40_RS21210 at 356.815 kb on + strand, within ABIE40_RS21210 at 356.845 kb on + strand, within ABIE40_RS21210 at 357.015 kb on + strand, within ABIE40_RS21210 at 357.016 kb on - strand, within ABIE40_RS21210 at 357.016 kb on - strand, within ABIE40_RS21210 at 357.073 kb on + strand, within ABIE40_RS21210 at 357.074 kb on - strand, within ABIE40_RS21210 at 357.233 kb on - strand, within ABIE40_RS21210 at 357.233 kb on - strand, within ABIE40_RS21210 at 357.295 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.317 kb on + strand, within ABIE40_RS21210 at 357.317 kb on + strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.324 kb on + strand, within ABIE40_RS21210 at 357.324 kb on + strand, within ABIE40_RS21210 at 357.439 kb on + strand, within ABIE40_RS21210 at 357.665 kb on + strand at 357.665 kb on + strand at 357.864 kb on + strand, within ABIE40_RS21215 at 358.005 kb on + strand, within ABIE40_RS21215 at 358.006 kb on - strand, within ABIE40_RS21215 at 358.332 kb on + strand, within ABIE40_RS21215 at 358.332 kb on + strand, within ABIE40_RS21215 at 358.333 kb on - strand, within ABIE40_RS21215 at 358.333 kb on - strand, within ABIE40_RS21215 at 358.333 kb on - strand, within ABIE40_RS21215 at 358.404 kb on + strand, within ABIE40_RS21215 at 358.404 kb on + strand, within ABIE40_RS21215 at 358.405 kb on - strand, within ABIE40_RS21215 at 358.488 kb on + strand at 358.488 kb on + strand at 358.488 kb on + strand at 358.488 kb on + strand at 358.489 kb on - strand at 358.489 kb on - strand at 358.489 kb on - strand at 358.489 kb on - strand at 358.489 kb on - strand at 358.489 kb on - strand at 358.489 kb on - strand at 358.582 kb on + strand at 358.582 kb on + strand at 358.583 kb on - strand at 358.583 kb on - strand at 358.583 kb on - strand at 358.700 kb on + strand, within ABIE40_RS21220 at 358.757 kb on + strand, within ABIE40_RS21220 at 358.757 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.790 kb on + strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.791 kb on - strand, within ABIE40_RS21220 at 358.955 kb on + strand, within ABIE40_RS21220 at 358.955 kb on + strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 358.956 kb on - strand, within ABIE40_RS21220 at 359.092 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.093 kb on + strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.094 kb on - strand, within ABIE40_RS21220 at 359.095 kb on + strand, within ABIE40_RS21220 at 359.096 kb on - strand, within ABIE40_RS21220 at 359.325 kb on - strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.415 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (C) remove 356,713 + +0.8 356,713 + -0.9 356,713 + -0.7 356,713 + -0.7 356,713 - +0.7 356,714 - -0.6 356,714 - -0.1 356,714 - -0.7 356,714 - -0.1 356,714 - +0.2 356,815 + ABIE40_RS21210 0.14 -0.6 356,815 + ABIE40_RS21210 0.14 +0.6 356,845 + ABIE40_RS21210 0.17 -0.3 357,015 + ABIE40_RS21210 0.35 +0.3 357,016 - ABIE40_RS21210 0.35 +1.1 357,016 - ABIE40_RS21210 0.35 -0.4 357,073 + ABIE40_RS21210 0.41 -0.0 357,074 - ABIE40_RS21210 0.41 -1.5 357,233 - ABIE40_RS21210 0.57 -0.4 357,233 - ABIE40_RS21210 0.57 -0.5 357,295 + ABIE40_RS21210 0.63 -1.6 357,313 + ABIE40_RS21210 0.65 -1.8 357,313 + ABIE40_RS21210 0.65 -0.9 357,313 + ABIE40_RS21210 0.65 +2.9 357,313 + ABIE40_RS21210 0.65 +0.7 357,314 - ABIE40_RS21210 0.65 -1.0 357,314 - ABIE40_RS21210 0.65 -0.3 357,314 - ABIE40_RS21210 0.65 +0.4 357,314 - ABIE40_RS21210 0.65 -0.5 357,314 - ABIE40_RS21210 0.65 -2.4 357,314 - ABIE40_RS21210 0.65 -0.3 357,317 + ABIE40_RS21210 0.66 +1.1 357,317 + ABIE40_RS21210 0.66 -2.0 357,318 - ABIE40_RS21210 0.66 +0.5 357,318 - ABIE40_RS21210 0.66 +1.1 357,318 - ABIE40_RS21210 0.66 +0.2 357,318 - ABIE40_RS21210 0.66 -1.2 357,318 - ABIE40_RS21210 0.66 -2.0 357,324 + ABIE40_RS21210 0.66 -1.0 357,324 + ABIE40_RS21210 0.66 -0.5 357,439 + ABIE40_RS21210 0.78 +0.0 357,665 + -0.3 357,665 + +0.5 357,864 + ABIE40_RS21215 0.20 +0.4 358,005 + ABIE40_RS21215 0.36 +0.1 358,006 - ABIE40_RS21215 0.36 +0.1 358,332 + ABIE40_RS21215 0.73 -0.8 358,332 + ABIE40_RS21215 0.73 -0.7 358,333 - ABIE40_RS21215 0.73 -0.1 358,333 - ABIE40_RS21215 0.73 -0.2 358,333 - ABIE40_RS21215 0.73 -0.6 358,404 + ABIE40_RS21215 0.81 +1.8 358,404 + ABIE40_RS21215 0.81 +0.3 358,405 - ABIE40_RS21215 0.81 -0.2 358,488 + -1.2 358,488 + -0.6 358,488 + -1.0 358,488 + +0.3 358,489 - +2.3 358,489 - -1.2 358,489 - -0.5 358,489 - +0.6 358,489 - -0.6 358,489 - -0.2 358,489 - -1.4 358,582 + -0.7 358,582 + -0.6 358,583 - +0.9 358,583 - +1.5 358,583 - -0.1 358,700 + ABIE40_RS21220 0.13 -0.5 358,757 + ABIE40_RS21220 0.19 -0.2 358,757 + ABIE40_RS21220 0.19 +0.7 358,790 + ABIE40_RS21220 0.23 +1.0 358,790 + ABIE40_RS21220 0.23 -1.5 358,790 + ABIE40_RS21220 0.23 -0.4 358,790 + ABIE40_RS21220 0.23 -0.0 358,790 + ABIE40_RS21220 0.23 -0.0 358,790 + ABIE40_RS21220 0.23 -0.4 358,790 + ABIE40_RS21220 0.23 +0.6 358,790 + ABIE40_RS21220 0.23 +0.8 358,791 - ABIE40_RS21220 0.23 -0.5 358,791 - ABIE40_RS21220 0.23 +0.4 358,791 - ABIE40_RS21220 0.23 -0.1 358,791 - ABIE40_RS21220 0.23 +0.3 358,791 - ABIE40_RS21220 0.23 +0.1 358,791 - ABIE40_RS21220 0.23 +1.0 358,955 + ABIE40_RS21220 0.40 +0.7 358,955 + ABIE40_RS21220 0.40 +0.1 358,956 - ABIE40_RS21220 0.40 -0.1 358,956 - ABIE40_RS21220 0.40 -0.6 358,956 - ABIE40_RS21220 0.40 -0.2 358,956 - ABIE40_RS21220 0.40 +0.8 358,956 - ABIE40_RS21220 0.40 -0.9 359,092 + ABIE40_RS21220 0.54 +1.0 359,093 + ABIE40_RS21220 0.55 +0.5 359,093 + ABIE40_RS21220 0.55 +1.0 359,093 + ABIE40_RS21220 0.55 -0.6 359,093 + ABIE40_RS21220 0.55 -1.3 359,093 + ABIE40_RS21220 0.55 -2.1 359,093 + ABIE40_RS21220 0.55 +0.9 359,093 + ABIE40_RS21220 0.55 +0.1 359,093 + ABIE40_RS21220 0.55 -1.2 359,093 + ABIE40_RS21220 0.55 +0.3 359,093 + ABIE40_RS21220 0.55 -0.3 359,093 + ABIE40_RS21220 0.55 -1.0 359,094 - ABIE40_RS21220 0.55 -0.0 359,094 - ABIE40_RS21220 0.55 +0.7 359,094 - ABIE40_RS21220 0.55 +0.3 359,094 - ABIE40_RS21220 0.55 -0.1 359,094 - ABIE40_RS21220 0.55 -1.1 359,094 - ABIE40_RS21220 0.55 -0.0 359,094 - ABIE40_RS21220 0.55 +1.2 359,094 - ABIE40_RS21220 0.55 +0.2 359,094 - ABIE40_RS21220 0.55 -0.0 359,094 - ABIE40_RS21220 0.55 -0.5 359,094 - ABIE40_RS21220 0.55 +0.1 359,094 - ABIE40_RS21220 0.55 +1.1 359,094 - ABIE40_RS21220 0.55 -0.3 359,094 - ABIE40_RS21220 0.55 -0.5 359,094 - ABIE40_RS21220 0.55 +0.2 359,095 + ABIE40_RS21220 0.55 +0.6 359,096 - ABIE40_RS21220 0.55 +0.1 359,325 - ABIE40_RS21220 0.79 -0.4 359,414 + ABIE40_RS21220 0.88 -0.1 359,414 + ABIE40_RS21220 0.88 +1.0 359,414 + ABIE40_RS21220 0.88 -0.3 359,415 - ABIE40_RS21220 0.88 +0.4 359,427 - ABIE40_RS21220 0.89 -0.3 359,427 - ABIE40_RS21220 0.89 -0.7 359,427 - ABIE40_RS21220 0.89 -0.6 359,427 - ABIE40_RS21220 0.89 -1.6 359,429 + ABIE40_RS21220 0.90 +0.3 359,429 + ABIE40_RS21220 0.90 +0.5 359,429 + ABIE40_RS21220 0.90 -1.2 359,429 + ABIE40_RS21220 0.90 -0.4 359,429 + ABIE40_RS21220 0.90 -0.8 359,430 - ABIE40_RS21220 0.90 -1.0 359,430 - ABIE40_RS21220 0.90 +0.7 359,430 - ABIE40_RS21220 0.90 +1.2 359,430 - ABIE40_RS21220 0.90 -0.3
Or see this region's nucleotide sequence