Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28465 and ABID97_RS28470 overlap by 4 nucleotides ABID97_RS28470 and ABID97_RS28475 are separated by 81 nucleotides
ABID97_RS28465: ABID97_RS28465 - HlyD family secretion protein, at 612,704 to 613,687
_RS28465
ABID97_RS28470: ABID97_RS28470 - TolC family protein, at 613,684 to 615,144
_RS28470
ABID97_RS28475: ABID97_RS28475 - LysR family transcriptional regulator, at 615,226 to 616,131
_RS28475
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -1
0
1 at 612.831 kb on - strand, within ABID97_RS28465 at 613.772 kb on - strand at 614.101 kb on + strand, within ABID97_RS28470 at 614.125 kb on + strand, within ABID97_RS28470 at 614.126 kb on - strand, within ABID97_RS28470 at 614.213 kb on + strand, within ABID97_RS28470 at 614.968 kb on + strand, within ABID97_RS28470 at 614.969 kb on - strand, within ABID97_RS28470 at 614.969 kb on - strand, within ABID97_RS28470 at 615.140 kb on - strand at 615.140 kb on - strand at 615.362 kb on + strand, within ABID97_RS28475 at 615.756 kb on - strand, within ABID97_RS28475 at 615.756 kb on - strand, within ABID97_RS28475 at 615.868 kb on + strand, within ABID97_RS28475 at 615.936 kb on - strand, within ABID97_RS28475 at 615.964 kb on + strand, within ABID97_RS28475 at 615.968 kb on + strand, within ABID97_RS28475 at 615.969 kb on - strand, within ABID97_RS28475
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 612,831 - ABID97_RS28465 0.13 +0.8 613,772 - -0.4 614,101 + ABID97_RS28470 0.29 +1.1 614,125 + ABID97_RS28470 0.30 -0.8 614,126 - ABID97_RS28470 0.30 +0.6 614,213 + ABID97_RS28470 0.36 +0.1 614,968 + ABID97_RS28470 0.88 +0.3 614,969 - ABID97_RS28470 0.88 +0.6 614,969 - ABID97_RS28470 0.88 +0.6 615,140 - +0.2 615,140 - +0.2 615,362 + ABID97_RS28475 0.15 -0.3 615,756 - ABID97_RS28475 0.58 +1.0 615,756 - ABID97_RS28475 0.58 -0.1 615,868 + ABID97_RS28475 0.71 +1.3 615,936 - ABID97_RS28475 0.78 -0.7 615,964 + ABID97_RS28475 0.81 +1.1 615,968 + ABID97_RS28475 0.82 +0.2 615,969 - ABID97_RS28475 0.82 -0.1
Or see this region's nucleotide sequence