Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21850 and ABID97_RS21855 overlap by 4 nucleotides ABID97_RS21855 and ABID97_RS21860 overlap by 4 nucleotides
ABID97_RS21850: ABID97_RS21850 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 4,521,421 to 4,522,692
_RS21850
ABID97_RS21855: ABID97_RS21855 - DUF1365 family protein, at 4,522,689 to 4,523,483
_RS21855
ABID97_RS21860: ABID97_RS21860 - FAD-dependent oxidoreductase, at 4,523,480 to 4,524,856
_RS21860
Position (kb) 4522
4523
4524 Strain fitness (log2 ratio) -2
-1
0
1 at 4521.827 kb on + strand, within ABID97_RS21850 at 4521.827 kb on + strand, within ABID97_RS21850 at 4522.178 kb on + strand, within ABID97_RS21850 at 4522.229 kb on + strand, within ABID97_RS21850 at 4523.080 kb on + strand, within ABID97_RS21855 at 4523.081 kb on - strand, within ABID97_RS21855 at 4523.116 kb on + strand, within ABID97_RS21855 at 4523.296 kb on + strand, within ABID97_RS21855 at 4523.297 kb on - strand, within ABID97_RS21855 at 4523.408 kb on - strand at 4523.408 kb on - strand at 4523.461 kb on + strand at 4523.718 kb on + strand, within ABID97_RS21860 at 4523.718 kb on + strand, within ABID97_RS21860 at 4523.718 kb on + strand, within ABID97_RS21860 at 4523.719 kb on - strand, within ABID97_RS21860 at 4523.719 kb on - strand, within ABID97_RS21860 at 4523.823 kb on + strand, within ABID97_RS21860 at 4523.866 kb on - strand, within ABID97_RS21860 at 4523.944 kb on - strand, within ABID97_RS21860 at 4524.075 kb on + strand, within ABID97_RS21860 at 4524.076 kb on - strand, within ABID97_RS21860 at 4524.162 kb on + strand, within ABID97_RS21860 at 4524.162 kb on + strand, within ABID97_RS21860 at 4524.163 kb on - strand, within ABID97_RS21860 at 4524.361 kb on - strand, within ABID97_RS21860 at 4524.361 kb on - strand, within ABID97_RS21860 at 4524.414 kb on + strand, within ABID97_RS21860 at 4524.415 kb on - strand, within ABID97_RS21860
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,521,827 + ABID97_RS21850 0.32 -0.8 4,521,827 + ABID97_RS21850 0.32 -0.4 4,522,178 + ABID97_RS21850 0.60 +0.2 4,522,229 + ABID97_RS21850 0.64 -0.7 4,523,080 + ABID97_RS21855 0.49 +0.2 4,523,081 - ABID97_RS21855 0.49 -1.8 4,523,116 + ABID97_RS21855 0.54 -0.3 4,523,296 + ABID97_RS21855 0.76 +0.6 4,523,297 - ABID97_RS21855 0.76 +0.1 4,523,408 - +0.2 4,523,408 - +0.1 4,523,461 + +0.5 4,523,718 + ABID97_RS21860 0.17 +0.4 4,523,718 + ABID97_RS21860 0.17 +1.5 4,523,718 + ABID97_RS21860 0.17 -0.7 4,523,719 - ABID97_RS21860 0.17 +0.4 4,523,719 - ABID97_RS21860 0.17 +0.1 4,523,823 + ABID97_RS21860 0.25 -0.0 4,523,866 - ABID97_RS21860 0.28 -0.3 4,523,944 - ABID97_RS21860 0.34 +0.5 4,524,075 + ABID97_RS21860 0.43 +1.5 4,524,076 - ABID97_RS21860 0.43 +0.8 4,524,162 + ABID97_RS21860 0.50 -0.2 4,524,162 + ABID97_RS21860 0.50 -0.8 4,524,163 - ABID97_RS21860 0.50 +1.5 4,524,361 - ABID97_RS21860 0.64 +0.1 4,524,361 - ABID97_RS21860 0.64 -0.4 4,524,414 + ABID97_RS21860 0.68 +0.3 4,524,415 - ABID97_RS21860 0.68 +0.1
Or see this region's nucleotide sequence