Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18565

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18560 and ABID97_RS18565 are separated by 167 nucleotidesABID97_RS18565 and ABID97_RS18570 are separated by 9 nucleotidesABID97_RS18570 and ABID97_RS18575 are separated by 87 nucleotides ABID97_RS18560: ABID97_RS18560 - FAD-dependent oxidoreductase, at 3,825,271 to 3,826,551 _RS18560 ABID97_RS18565: ABID97_RS18565 - TetR/AcrR family transcriptional regulator, at 3,826,719 to 3,827,342 _RS18565 ABID97_RS18570: ABID97_RS18570 - nitroreductase, at 3,827,352 to 3,828,053 _RS18570 ABID97_RS18575: ABID97_RS18575 - CoA transferase, at 3,828,141 to 3,828,584 _RS18575 Position (kb) 3826 3827 3828Strain fitness (log2 ratio) -1 0 1 2 3at 3825.960 kb on - strand, within ABID97_RS18560at 3826.562 kb on - strandat 3826.989 kb on + strand, within ABID97_RS18565

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,825,960 - ABID97_RS18560 0.54 -0.2
3,826,562 - +3.0
3,826,989 + ABID97_RS18565 0.43 -0.4

Or see this region's nucleotide sequence