Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09085

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09065 and ABID97_RS09070 are separated by 11 nucleotidesABID97_RS09070 and ABID97_RS09075 are separated by 123 nucleotidesABID97_RS09075 and ABID97_RS09080 are separated by 113 nucleotidesABID97_RS09080 and ABID97_RS09085 are separated by 47 nucleotidesABID97_RS09085 and ABID97_RS09090 are separated by 10 nucleotidesABID97_RS09090 and ABID97_RS09095 overlap by 4 nucleotidesABID97_RS09095 and ABID97_RS09100 are separated by 29 nucleotides ABID97_RS09065: ABID97_RS09065 - type II and III secretion system protein family protein, at 1,904,249 to 1,905,772 _RS09065 ABID97_RS09070: ABID97_RS09070 - hypothetical protein, at 1,905,784 to 1,906,077 _RS09070 ABID97_RS09075: ABID97_RS09075 - Flp family type IVb pilin, at 1,906,201 to 1,906,416 _RS09075 ABID97_RS09080: ABID97_RS09080 - Flp family type IVb pilin, at 1,906,530 to 1,906,715 _RS09080 ABID97_RS09085: ABID97_RS09085 - pilus assembly protein TadG-related protein, at 1,906,763 to 1,907,992 _RS09085 ABID97_RS09090: ABID97_RS09090 - TadE family protein, at 1,908,003 to 1,908,461 _RS09090 ABID97_RS09095: ABID97_RS09095 - TadE/TadG family type IV pilus assembly protein, at 1,908,458 to 1,908,907 _RS09095 ABID97_RS09100: ABID97_RS09100 - AAA family ATPase, at 1,908,937 to 1,910,088 _RS09100 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1905.995 kb on - strand, within ABID97_RS09070at 1905.995 kb on - strand, within ABID97_RS09070at 1906.159 kb on + strandat 1906.522 kb on + strandat 1906.522 kb on + strandat 1906.522 kb on + strandat 1906.522 kb on + strandat 1907.082 kb on - strand, within ABID97_RS09085at 1907.082 kb on - strand, within ABID97_RS09085at 1907.090 kb on - strand, within ABID97_RS09085at 1907.117 kb on + strand, within ABID97_RS09085at 1907.118 kb on - strand, within ABID97_RS09085at 1907.118 kb on - strand, within ABID97_RS09085at 1907.199 kb on - strand, within ABID97_RS09085at 1907.537 kb on + strand, within ABID97_RS09085at 1907.977 kb on + strandat 1907.978 kb on - strandat 1908.111 kb on + strand, within ABID97_RS09090at 1908.112 kb on - strand, within ABID97_RS09090at 1908.150 kb on + strand, within ABID97_RS09090at 1908.704 kb on + strand, within ABID97_RS09095at 1908.852 kb on - strand, within ABID97_RS09095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,905,995 - ABID97_RS09070 0.72 +0.3
1,905,995 - ABID97_RS09070 0.72 +0.3
1,906,159 + +0.6
1,906,522 + -0.6
1,906,522 + -0.8
1,906,522 + +0.8
1,906,522 + -0.2
1,907,082 - ABID97_RS09085 0.26 +0.1
1,907,082 - ABID97_RS09085 0.26 +0.1
1,907,090 - ABID97_RS09085 0.27 +0.3
1,907,117 + ABID97_RS09085 0.29 -0.1
1,907,118 - ABID97_RS09085 0.29 +4.2
1,907,118 - ABID97_RS09085 0.29 -0.7
1,907,199 - ABID97_RS09085 0.35 -0.6
1,907,537 + ABID97_RS09085 0.63 -2.3
1,907,977 + +0.3
1,907,978 - +0.2
1,908,111 + ABID97_RS09090 0.24 +3.1
1,908,112 - ABID97_RS09090 0.24 -1.0
1,908,150 + ABID97_RS09090 0.32 -1.0
1,908,704 + ABID97_RS09095 0.55 -0.9
1,908,852 - ABID97_RS09095 0.88 -0.8

Or see this region's nucleotide sequence