Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03815 and ABID97_RS03820 are separated by 4 nucleotides ABID97_RS03820 and ABID97_RS03825 overlap by 4 nucleotides
ABID97_RS03815: ABID97_RS03815 - NAD(P)/FAD-dependent oxidoreductase, at 781,493 to 783,136
_RS03815
ABID97_RS03820: ABID97_RS03820 - beta-ketoacyl synthase chain length factor, at 783,141 to 783,986
_RS03820
ABID97_RS03825: ABID97_RS03825 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 783,983 to 785,185
_RS03825
Position (kb) 783
784 Strain fitness (log2 ratio) -1
0
1 at 782.142 kb on + strand, within ABID97_RS03815 at 782.295 kb on + strand, within ABID97_RS03815 at 782.772 kb on + strand, within ABID97_RS03815 at 782.772 kb on + strand, within ABID97_RS03815 at 782.772 kb on + strand, within ABID97_RS03815 at 782.773 kb on - strand, within ABID97_RS03815 at 782.773 kb on - strand, within ABID97_RS03815 at 782.773 kb on - strand, within ABID97_RS03815 at 782.773 kb on - strand, within ABID97_RS03815 at 782.802 kb on + strand, within ABID97_RS03815 at 782.802 kb on + strand, within ABID97_RS03815 at 782.820 kb on + strand, within ABID97_RS03815 at 782.949 kb on + strand, within ABID97_RS03815 at 782.949 kb on + strand, within ABID97_RS03815 at 783.142 kb on + strand at 783.142 kb on + strand at 783.143 kb on - strand at 783.463 kb on + strand, within ABID97_RS03820 at 783.615 kb on + strand, within ABID97_RS03820 at 783.679 kb on + strand, within ABID97_RS03820 at 783.679 kb on + strand, within ABID97_RS03820 at 783.679 kb on + strand, within ABID97_RS03820 at 783.680 kb on - strand, within ABID97_RS03820 at 783.680 kb on - strand, within ABID97_RS03820 at 783.946 kb on + strand at 783.947 kb on - strand at 784.317 kb on + strand, within ABID97_RS03825 at 784.317 kb on + strand, within ABID97_RS03825 at 784.318 kb on - strand, within ABID97_RS03825 at 784.318 kb on - strand, within ABID97_RS03825 at 784.318 kb on - strand, within ABID97_RS03825 at 784.440 kb on + strand, within ABID97_RS03825 at 784.896 kb on + strand, within ABID97_RS03825
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 782,142 + ABID97_RS03815 0.39 +0.3 782,295 + ABID97_RS03815 0.49 -0.7 782,772 + ABID97_RS03815 0.78 -1.1 782,772 + ABID97_RS03815 0.78 +0.0 782,772 + ABID97_RS03815 0.78 -0.8 782,773 - ABID97_RS03815 0.78 -1.6 782,773 - ABID97_RS03815 0.78 -0.7 782,773 - ABID97_RS03815 0.78 -0.3 782,773 - ABID97_RS03815 0.78 -0.0 782,802 + ABID97_RS03815 0.80 +1.3 782,802 + ABID97_RS03815 0.80 +0.7 782,820 + ABID97_RS03815 0.81 -0.3 782,949 + ABID97_RS03815 0.89 -0.6 782,949 + ABID97_RS03815 0.89 +0.8 783,142 + -0.2 783,142 + +0.3 783,143 - -0.5 783,463 + ABID97_RS03820 0.38 +0.6 783,615 + ABID97_RS03820 0.56 -0.3 783,679 + ABID97_RS03820 0.64 +1.3 783,679 + ABID97_RS03820 0.64 +1.5 783,679 + ABID97_RS03820 0.64 -0.9 783,680 - ABID97_RS03820 0.64 +0.3 783,680 - ABID97_RS03820 0.64 +0.7 783,946 + +0.3 783,947 - +0.5 784,317 + ABID97_RS03825 0.28 -0.2 784,317 + ABID97_RS03825 0.28 +1.0 784,318 - ABID97_RS03825 0.28 +0.7 784,318 - ABID97_RS03825 0.28 -0.3 784,318 - ABID97_RS03825 0.28 +1.1 784,440 + ABID97_RS03825 0.38 -0.5 784,896 + ABID97_RS03825 0.76 +0.9
Or see this region's nucleotide sequence