Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03310

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03300 and ABID97_RS03305 overlap by 4 nucleotidesABID97_RS03305 and ABID97_RS03310 are separated by 65 nucleotidesABID97_RS03310 and ABID97_RS03315 overlap by 4 nucleotidesABID97_RS03315 and ABID97_RS03320 are separated by 228 nucleotides ABID97_RS03300: ABID97_RS03300 - glutaminase, at 666,402 to 667,340 _RS03300 ABID97_RS03305: ABID97_RS03305 - DMT family transporter, at 667,337 to 668,236 _RS03305 ABID97_RS03310: ABID97_RS03310 - BON domain-containing protein, at 668,302 to 668,799 _RS03310 ABID97_RS03315: ABID97_RS03315 - flavin reductase family protein, at 668,796 to 669,305 _RS03315 ABID97_RS03320: ABID97_RS03320 - tripartite tricarboxylate transporter substrate binding protein, at 669,534 to 670,526 _RS03320 Position (kb) 668 669Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 667.590 kb on + strand, within ABID97_RS03305at 667.591 kb on - strand, within ABID97_RS03305at 667.591 kb on - strand, within ABID97_RS03305at 667.662 kb on + strand, within ABID97_RS03305at 667.662 kb on + strand, within ABID97_RS03305at 667.663 kb on - strand, within ABID97_RS03305at 667.921 kb on - strand, within ABID97_RS03305at 667.921 kb on - strand, within ABID97_RS03305at 667.921 kb on - strand, within ABID97_RS03305at 667.968 kb on + strand, within ABID97_RS03305at 667.968 kb on + strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 667.969 kb on - strand, within ABID97_RS03305at 668.445 kb on - strand, within ABID97_RS03310at 668.445 kb on - strand, within ABID97_RS03310at 668.543 kb on + strand, within ABID97_RS03310at 668.550 kb on - strand, within ABID97_RS03310at 668.642 kb on + strand, within ABID97_RS03310at 668.642 kb on + strand, within ABID97_RS03310at 668.642 kb on + strand, within ABID97_RS03310at 668.643 kb on - strand, within ABID97_RS03310at 668.643 kb on - strand, within ABID97_RS03310at 668.643 kb on - strand, within ABID97_RS03310at 668.815 kb on + strandat 668.816 kb on - strandat 668.816 kb on - strandat 669.341 kb on + strandat 669.341 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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667,590 + ABID97_RS03305 0.28 -0.5
667,591 - ABID97_RS03305 0.28 +4.9
667,591 - ABID97_RS03305 0.28 -0.8
667,662 + ABID97_RS03305 0.36 +1.0
667,662 + ABID97_RS03305 0.36 +2.3
667,663 - ABID97_RS03305 0.36 +0.2
667,921 - ABID97_RS03305 0.65 -0.7
667,921 - ABID97_RS03305 0.65 -0.1
667,921 - ABID97_RS03305 0.65 +0.3
667,968 + ABID97_RS03305 0.70 -0.4
667,968 + ABID97_RS03305 0.70 +0.9
667,969 - ABID97_RS03305 0.70 -0.8
667,969 - ABID97_RS03305 0.70 -0.2
667,969 - ABID97_RS03305 0.70 +0.0
667,969 - ABID97_RS03305 0.70 -0.2
667,969 - ABID97_RS03305 0.70 -0.3
667,969 - ABID97_RS03305 0.70 -0.5
667,969 - ABID97_RS03305 0.70 +0.1
668,445 - ABID97_RS03310 0.29 -0.4
668,445 - ABID97_RS03310 0.29 -0.9
668,543 + ABID97_RS03310 0.48 +0.2
668,550 - ABID97_RS03310 0.50 +0.3
668,642 + ABID97_RS03310 0.68 -0.0
668,642 + ABID97_RS03310 0.68 +0.3
668,642 + ABID97_RS03310 0.68 +0.4
668,643 - ABID97_RS03310 0.68 -0.5
668,643 - ABID97_RS03310 0.68 +1.3
668,643 - ABID97_RS03310 0.68 +0.0
668,815 + -0.2
668,816 - -0.5
668,816 - -0.1
669,341 + +0.1
669,341 + -0.1

Or see this region's nucleotide sequence