Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02855 and ABID97_RS02860 overlap by 4 nucleotides ABID97_RS02860 and ABID97_RS02865 overlap by 8 nucleotides ABID97_RS02865 and ABID97_RS02870 are separated by 62 nucleotides
ABID97_RS02855: ABID97_RS02855 - sensor histidine kinase N-terminal domain-containing protein, at 583,497 to 584,891
_RS02855
ABID97_RS02860: ABID97_RS02860 - VOC family protein, at 584,888 to 585,667
_RS02860
ABID97_RS02865: ABID97_RS02865 - RidA family protein, at 585,660 to 586,145
_RS02865
ABID97_RS02870: ABID97_RS02870 - alkene reductase, at 586,208 to 587,311
_RS02870
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 584.803 kb on - strand at 584.889 kb on + strand at 585.018 kb on + strand, within ABID97_RS02860 at 585.018 kb on + strand, within ABID97_RS02860 at 585.273 kb on + strand, within ABID97_RS02860 at 585.273 kb on + strand, within ABID97_RS02860 at 585.274 kb on - strand, within ABID97_RS02860 at 585.274 kb on - strand, within ABID97_RS02860 at 585.274 kb on - strand, within ABID97_RS02860 at 585.330 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.582 kb on + strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.583 kb on - strand, within ABID97_RS02860 at 585.937 kb on + strand, within ABID97_RS02865 at 585.937 kb on + strand, within ABID97_RS02865 at 585.938 kb on - strand, within ABID97_RS02865 at 585.938 kb on - strand, within ABID97_RS02865 at 586.068 kb on + strand, within ABID97_RS02865 at 586.068 kb on + strand, within ABID97_RS02865 at 586.068 kb on + strand, within ABID97_RS02865 at 586.069 kb on - strand, within ABID97_RS02865 at 586.234 kb on - strand at 586.254 kb on + strand at 586.254 kb on + strand at 586.254 kb on + strand at 586.254 kb on + strand at 586.255 kb on - strand at 586.255 kb on - strand at 586.396 kb on - strand, within ABID97_RS02870 at 586.461 kb on + strand, within ABID97_RS02870 at 586.461 kb on + strand, within ABID97_RS02870 at 586.462 kb on - strand, within ABID97_RS02870 at 586.462 kb on - strand, within ABID97_RS02870 at 586.524 kb on + strand, within ABID97_RS02870 at 586.524 kb on + strand, within ABID97_RS02870 at 586.524 kb on + strand, within ABID97_RS02870 at 586.525 kb on - strand, within ABID97_RS02870 at 586.525 kb on - strand, within ABID97_RS02870 at 586.525 kb on - strand, within ABID97_RS02870 at 586.560 kb on + strand, within ABID97_RS02870 at 586.560 kb on + strand, within ABID97_RS02870 at 586.560 kb on + strand, within ABID97_RS02870 at 586.561 kb on - strand, within ABID97_RS02870 at 586.561 kb on - strand, within ABID97_RS02870 at 586.561 kb on - strand, within ABID97_RS02870 at 586.561 kb on - strand, within ABID97_RS02870 at 586.764 kb on + strand, within ABID97_RS02870 at 586.764 kb on + strand, within ABID97_RS02870 at 586.764 kb on + strand, within ABID97_RS02870 at 587.098 kb on - strand, within ABID97_RS02870 at 587.118 kb on + strand, within ABID97_RS02870 at 587.119 kb on - strand, within ABID97_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 584,803 - -0.6 584,889 + -0.3 585,018 + ABID97_RS02860 0.17 -0.2 585,018 + ABID97_RS02860 0.17 -0.2 585,273 + ABID97_RS02860 0.49 +0.0 585,273 + ABID97_RS02860 0.49 +0.1 585,274 - ABID97_RS02860 0.49 -0.9 585,274 - ABID97_RS02860 0.49 -0.2 585,274 - ABID97_RS02860 0.49 -0.7 585,330 + ABID97_RS02860 0.57 +0.3 585,582 + ABID97_RS02860 0.89 +1.3 585,582 + ABID97_RS02860 0.89 +2.3 585,582 + ABID97_RS02860 0.89 -0.3 585,582 + ABID97_RS02860 0.89 -0.3 585,582 + ABID97_RS02860 0.89 -1.8 585,583 - ABID97_RS02860 0.89 -0.3 585,583 - ABID97_RS02860 0.89 +0.1 585,583 - ABID97_RS02860 0.89 -0.6 585,583 - ABID97_RS02860 0.89 +0.3 585,937 + ABID97_RS02865 0.57 -0.5 585,937 + ABID97_RS02865 0.57 -1.0 585,938 - ABID97_RS02865 0.57 +1.7 585,938 - ABID97_RS02865 0.57 -0.3 586,068 + ABID97_RS02865 0.84 +0.3 586,068 + ABID97_RS02865 0.84 +2.3 586,068 + ABID97_RS02865 0.84 -1.6 586,069 - ABID97_RS02865 0.84 -0.7 586,234 - -0.4 586,254 + +0.2 586,254 + -1.0 586,254 + -0.9 586,254 + +0.9 586,255 - +0.4 586,255 - +0.1 586,396 - ABID97_RS02870 0.17 +2.7 586,461 + ABID97_RS02870 0.23 -1.1 586,461 + ABID97_RS02870 0.23 -0.4 586,462 - ABID97_RS02870 0.23 -0.5 586,462 - ABID97_RS02870 0.23 +0.3 586,524 + ABID97_RS02870 0.29 -0.0 586,524 + ABID97_RS02870 0.29 +1.3 586,524 + ABID97_RS02870 0.29 -0.7 586,525 - ABID97_RS02870 0.29 +0.9 586,525 - ABID97_RS02870 0.29 -1.3 586,525 - ABID97_RS02870 0.29 +0.2 586,560 + ABID97_RS02870 0.32 +0.1 586,560 + ABID97_RS02870 0.32 -0.5 586,560 + ABID97_RS02870 0.32 +1.3 586,561 - ABID97_RS02870 0.32 -0.2 586,561 - ABID97_RS02870 0.32 +0.2 586,561 - ABID97_RS02870 0.32 -0.5 586,561 - ABID97_RS02870 0.32 +1.5 586,764 + ABID97_RS02870 0.50 +0.2 586,764 + ABID97_RS02870 0.50 +0.1 586,764 + ABID97_RS02870 0.50 -0.0 587,098 - ABID97_RS02870 0.81 +0.3 587,118 + ABID97_RS02870 0.82 -0.3 587,119 - ABID97_RS02870 0.83 +0.2
Or see this region's nucleotide sequence