Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01025 and ABID97_RS01030 are separated by 1 nucleotides ABID97_RS01030 and ABID97_RS01035 are separated by 286 nucleotides ABID97_RS01035 and ABID97_RS01040 are separated by 34 nucleotides ABID97_RS01040 and ABID97_RS01045 are separated by 22 nucleotides
ABID97_RS01025: ABID97_RS01025 - potassium-transporting ATPase subunit KdpA, at 208,618 to 210,342
_RS01025
ABID97_RS01030: ABID97_RS01030 - K(+)-transporting ATPase subunit F, at 210,344 to 210,442
_RS01030
ABID97_RS01035: ABID97_RS01035 - metalloregulator ArsR/SmtB family transcription factor, at 210,729 to 211,400
_RS01035
ABID97_RS01040: ABID97_RS01040 - Fe-Mn family superoxide dismutase, at 211,435 to 212,017
_RS01040
ABID97_RS01045: ABID97_RS01045 - VOC family protein, at 212,040 to 212,417
_RS01045
Position (kb) 210
211
212 Strain fitness (log2 ratio) -1
0
1
2 at 209.963 kb on + strand, within ABID97_RS01025 at 209.964 kb on - strand, within ABID97_RS01025 at 209.964 kb on - strand, within ABID97_RS01025 at 209.988 kb on - strand, within ABID97_RS01025 at 210.633 kb on + strand at 211.104 kb on + strand, within ABID97_RS01035 at 211.104 kb on + strand, within ABID97_RS01035 at 211.104 kb on + strand, within ABID97_RS01035 at 211.105 kb on - strand, within ABID97_RS01035 at 211.105 kb on - strand, within ABID97_RS01035 at 212.149 kb on + strand, within ABID97_RS01045 at 212.252 kb on - strand, within ABID97_RS01045 at 212.351 kb on - strand, within ABID97_RS01045 at 212.351 kb on - strand, within ABID97_RS01045
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 209,963 + ABID97_RS01025 0.78 -0.7 209,964 - ABID97_RS01025 0.78 +0.7 209,964 - ABID97_RS01025 0.78 +0.4 209,988 - ABID97_RS01025 0.79 -0.6 210,633 + -0.6 211,104 + ABID97_RS01035 0.56 -1.5 211,104 + ABID97_RS01035 0.56 -0.8 211,104 + ABID97_RS01035 0.56 +0.6 211,105 - ABID97_RS01035 0.56 +2.2 211,105 - ABID97_RS01035 0.56 -0.0 212,149 + ABID97_RS01045 0.29 +1.0 212,252 - ABID97_RS01045 0.56 +0.2 212,351 - ABID97_RS01045 0.82 -0.9 212,351 - ABID97_RS01045 0.82 -0.3
Or see this region's nucleotide sequence