Strain Fitness in Escherichia coli BW25113 around b3634

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkdtA and coaD are separated by 7 nucleotidescoaD and mutM are separated by 38 nucleotidesmutM and rpmG are separated by 97 nucleotides b3633: kdtA - 3-deoxy-D-manno-octulosonic-acid transferase (NCBI), at 3,806,563 to 3,807,840 kdtA b3634: coaD - phosphopantetheine adenylyltransferase (NCBI), at 3,807,848 to 3,808,327 coaD b3635: mutM - formamidopyrimidine-DNA glycosylase (NCBI), at 3,808,366 to 3,809,175 mutM b3636: rpmG - 50S ribosomal protein L33 (NCBI), at 3,809,273 to 3,809,440 rpmG Position (kb) 3807 3808 3809Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3808.353 kb on - strandat 3808.433 kb on + strandat 3808.433 kb on + strandat 3808.443 kb on - strandat 3808.450 kb on - strand, within mutMat 3808.497 kb on + strand, within mutMat 3808.532 kb on + strand, within mutMat 3808.535 kb on - strand, within mutMat 3808.540 kb on - strand, within mutMat 3808.558 kb on - strand, within mutMat 3808.563 kb on - strand, within mutMat 3808.565 kb on + strand, within mutMat 3808.614 kb on - strand, within mutMat 3808.614 kb on - strand, within mutMat 3808.699 kb on - strand, within mutMat 3808.738 kb on + strand, within mutMat 3808.753 kb on - strand, within mutMat 3808.757 kb on + strand, within mutMat 3808.758 kb on - strand, within mutMat 3808.766 kb on - strand, within mutMat 3808.784 kb on + strand, within mutMat 3808.793 kb on - strand, within mutMat 3808.796 kb on - strand, within mutMat 3808.810 kb on - strand, within mutMat 3808.824 kb on - strand, within mutMat 3808.826 kb on + strand, within mutMat 3808.833 kb on + strand, within mutMat 3808.833 kb on + strand, within mutMat 3808.834 kb on - strand, within mutMat 3808.834 kb on - strand, within mutMat 3808.859 kb on + strand, within mutMat 3808.859 kb on + strand, within mutMat 3808.859 kb on + strand, within mutMat 3808.859 kb on + strand, within mutMat 3808.864 kb on - strand, within mutMat 3808.911 kb on - strand, within mutMat 3808.911 kb on - strand, within mutMat 3808.931 kb on + strand, within mutMat 3808.931 kb on + strand, within mutMat 3808.954 kb on - strand, within mutMat 3808.954 kb on - strand, within mutMat 3808.954 kb on - strand, within mutMat 3808.987 kb on - strand, within mutMat 3809.014 kb on + strand, within mutMat 3809.014 kb on + strand, within mutMat 3809.031 kb on - strand, within mutMat 3809.056 kb on - strand, within mutMat 3809.056 kb on - strand, within mutMat 3809.066 kb on - strand, within mutMat 3809.105 kb on - strandat 3809.112 kb on - strandat 3809.114 kb on + strandat 3809.114 kb on + strandat 3809.130 kb on + strandat 3809.138 kb on - strandat 3809.138 kb on - strandat 3809.143 kb on - strandat 3809.177 kb on + strandat 3809.204 kb on + strandat 3809.204 kb on + strandat 3809.204 kb on + strandat 3809.206 kb on + strandat 3809.214 kb on - strandat 3809.214 kb on - strandat 3809.306 kb on - strand, within rpmGat 3809.306 kb on - strand, within rpmG

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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3,808,353 - +0.3
3,808,433 + +1.1
3,808,433 + +0.2
3,808,443 - +0.0
3,808,450 - mutM b3635 0.10 +0.9
3,808,497 + mutM b3635 0.16 -0.0
3,808,532 + mutM b3635 0.20 -0.4
3,808,535 - mutM b3635 0.21 -2.3
3,808,540 - mutM b3635 0.21 -0.3
3,808,558 - mutM b3635 0.24 -0.4
3,808,563 - mutM b3635 0.24 -0.5
3,808,565 + mutM b3635 0.25 +0.2
3,808,614 - mutM b3635 0.31 +0.7
3,808,614 - mutM b3635 0.31 +0.7
3,808,699 - mutM b3635 0.41 +0.3
3,808,738 + mutM b3635 0.46 -0.3
3,808,753 - mutM b3635 0.48 +1.3
3,808,757 + mutM b3635 0.48 -0.0
3,808,758 - mutM b3635 0.48 +0.1
3,808,766 - mutM b3635 0.49 +0.1
3,808,784 + mutM b3635 0.52 -0.3
3,808,793 - mutM b3635 0.53 +0.5
3,808,796 - mutM b3635 0.53 +0.2
3,808,810 - mutM b3635 0.55 -0.0
3,808,824 - mutM b3635 0.57 -0.5
3,808,826 + mutM b3635 0.57 +0.7
3,808,833 + mutM b3635 0.58 -0.4
3,808,833 + mutM b3635 0.58 +0.6
3,808,834 - mutM b3635 0.58 -0.0
3,808,834 - mutM b3635 0.58 +1.0
3,808,859 + mutM b3635 0.61 +0.1
3,808,859 + mutM b3635 0.61 +0.1
3,808,859 + mutM b3635 0.61 -0.0
3,808,859 + mutM b3635 0.61 -0.1
3,808,864 - mutM b3635 0.61 -0.0
3,808,911 - mutM b3635 0.67 -0.0
3,808,911 - mutM b3635 0.67 -0.9
3,808,931 + mutM b3635 0.70 -0.5
3,808,931 + mutM b3635 0.70 -0.7
3,808,954 - mutM b3635 0.73 +0.5
3,808,954 - mutM b3635 0.73 +0.4
3,808,954 - mutM b3635 0.73 +0.2
3,808,987 - mutM b3635 0.77 -0.3
3,809,014 + mutM b3635 0.80 +0.6
3,809,014 + mutM b3635 0.80 -1.7
3,809,031 - mutM b3635 0.82 +0.5
3,809,056 - mutM b3635 0.85 +1.4
3,809,056 - mutM b3635 0.85 -0.3
3,809,066 - mutM b3635 0.86 +0.7
3,809,105 - -0.6
3,809,112 - +2.9
3,809,114 + -0.6
3,809,114 + -1.1
3,809,130 + +1.0
3,809,138 - +0.3
3,809,138 - -0.8
3,809,143 - -0.1
3,809,177 + +1.4
3,809,204 + +1.3
3,809,204 + +0.6
3,809,204 + +1.0
3,809,206 + -0.1
3,809,214 - -0.1
3,809,214 - +0.1
3,809,306 - rpmG b3636 0.20 -0.1
3,809,306 - rpmG b3636 0.20 +0.7

Or see this region's nucleotide sequence