Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdtA and coaD are separated by 7 nucleotides coaD and mutM are separated by 38 nucleotides mutM and rpmG are separated by 97 nucleotides
b3633: kdtA - 3-deoxy-D-manno-octulosonic-acid transferase (NCBI), at 3,806,563 to 3,807,840
kdtA
b3634: coaD - phosphopantetheine adenylyltransferase (NCBI), at 3,807,848 to 3,808,327
coaD
b3635: mutM - formamidopyrimidine-DNA glycosylase (NCBI), at 3,808,366 to 3,809,175
mutM
b3636: rpmG - 50S ribosomal protein L33 (NCBI), at 3,809,273 to 3,809,440
rpmG
Position (kb)
3807
3808
3809 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3808.353 kb on - strand at 3808.433 kb on + strand at 3808.433 kb on + strand at 3808.443 kb on - strand at 3808.450 kb on - strand, within mutM at 3808.497 kb on + strand, within mutM at 3808.532 kb on + strand, within mutM at 3808.535 kb on - strand, within mutM at 3808.540 kb on - strand, within mutM at 3808.558 kb on - strand, within mutM at 3808.563 kb on - strand, within mutM at 3808.565 kb on + strand, within mutM at 3808.614 kb on - strand, within mutM at 3808.614 kb on - strand, within mutM at 3808.699 kb on - strand, within mutM at 3808.738 kb on + strand, within mutM at 3808.753 kb on - strand, within mutM at 3808.757 kb on + strand, within mutM at 3808.758 kb on - strand, within mutM at 3808.766 kb on - strand, within mutM at 3808.784 kb on + strand, within mutM at 3808.793 kb on - strand, within mutM at 3808.796 kb on - strand, within mutM at 3808.810 kb on - strand, within mutM at 3808.824 kb on - strand, within mutM at 3808.826 kb on + strand, within mutM at 3808.833 kb on + strand, within mutM at 3808.833 kb on + strand, within mutM at 3808.834 kb on - strand, within mutM at 3808.834 kb on - strand, within mutM at 3808.859 kb on + strand, within mutM at 3808.859 kb on + strand, within mutM at 3808.859 kb on + strand, within mutM at 3808.859 kb on + strand, within mutM at 3808.864 kb on - strand, within mutM at 3808.911 kb on - strand, within mutM at 3808.911 kb on - strand, within mutM at 3808.931 kb on + strand, within mutM at 3808.931 kb on + strand, within mutM at 3808.954 kb on - strand, within mutM at 3808.954 kb on - strand, within mutM at 3808.954 kb on - strand, within mutM at 3808.987 kb on - strand, within mutM at 3809.014 kb on + strand, within mutM at 3809.014 kb on + strand, within mutM at 3809.031 kb on - strand, within mutM at 3809.056 kb on - strand, within mutM at 3809.056 kb on - strand, within mutM at 3809.066 kb on - strand, within mutM at 3809.105 kb on - strand at 3809.112 kb on - strand at 3809.114 kb on + strand at 3809.114 kb on + strand at 3809.130 kb on + strand at 3809.138 kb on - strand at 3809.138 kb on - strand at 3809.143 kb on - strand at 3809.177 kb on + strand at 3809.204 kb on + strand at 3809.204 kb on + strand at 3809.204 kb on + strand at 3809.206 kb on + strand at 3809.214 kb on - strand at 3809.214 kb on - strand at 3809.306 kb on - strand, within rpmG at 3809.306 kb on - strand, within rpmG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 3,808,353 - +0.3 3,808,433 + +1.1 3,808,433 + +0.2 3,808,443 - +0.0 3,808,450 - mutM b3635 0.10 +0.9 3,808,497 + mutM b3635 0.16 -0.0 3,808,532 + mutM b3635 0.20 -0.4 3,808,535 - mutM b3635 0.21 -2.3 3,808,540 - mutM b3635 0.21 -0.3 3,808,558 - mutM b3635 0.24 -0.4 3,808,563 - mutM b3635 0.24 -0.5 3,808,565 + mutM b3635 0.25 +0.2 3,808,614 - mutM b3635 0.31 +0.7 3,808,614 - mutM b3635 0.31 +0.7 3,808,699 - mutM b3635 0.41 +0.3 3,808,738 + mutM b3635 0.46 -0.3 3,808,753 - mutM b3635 0.48 +1.3 3,808,757 + mutM b3635 0.48 -0.0 3,808,758 - mutM b3635 0.48 +0.1 3,808,766 - mutM b3635 0.49 +0.1 3,808,784 + mutM b3635 0.52 -0.3 3,808,793 - mutM b3635 0.53 +0.5 3,808,796 - mutM b3635 0.53 +0.2 3,808,810 - mutM b3635 0.55 -0.0 3,808,824 - mutM b3635 0.57 -0.5 3,808,826 + mutM b3635 0.57 +0.7 3,808,833 + mutM b3635 0.58 -0.4 3,808,833 + mutM b3635 0.58 +0.6 3,808,834 - mutM b3635 0.58 -0.0 3,808,834 - mutM b3635 0.58 +1.0 3,808,859 + mutM b3635 0.61 +0.1 3,808,859 + mutM b3635 0.61 +0.1 3,808,859 + mutM b3635 0.61 -0.0 3,808,859 + mutM b3635 0.61 -0.1 3,808,864 - mutM b3635 0.61 -0.0 3,808,911 - mutM b3635 0.67 -0.0 3,808,911 - mutM b3635 0.67 -0.9 3,808,931 + mutM b3635 0.70 -0.5 3,808,931 + mutM b3635 0.70 -0.7 3,808,954 - mutM b3635 0.73 +0.5 3,808,954 - mutM b3635 0.73 +0.4 3,808,954 - mutM b3635 0.73 +0.2 3,808,987 - mutM b3635 0.77 -0.3 3,809,014 + mutM b3635 0.80 +0.6 3,809,014 + mutM b3635 0.80 -1.7 3,809,031 - mutM b3635 0.82 +0.5 3,809,056 - mutM b3635 0.85 +1.4 3,809,056 - mutM b3635 0.85 -0.3 3,809,066 - mutM b3635 0.86 +0.7 3,809,105 - -0.6 3,809,112 - +2.9 3,809,114 + -0.6 3,809,114 + -1.1 3,809,130 + +1.0 3,809,138 - +0.3 3,809,138 - -0.8 3,809,143 - -0.1 3,809,177 + +1.4 3,809,204 + +1.3 3,809,204 + +0.6 3,809,204 + +1.0 3,809,206 + -0.1 3,809,214 - -0.1 3,809,214 - +0.1 3,809,306 - rpmG b3636 0.20 -0.1 3,809,306 - rpmG b3636 0.20 +0.7
Or see this region's nucleotide sequence