Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS20550

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS20545 and RPSI07_RS20550 are separated by 7 nucleotidesRPSI07_RS20550 and RPSI07_RS20555 are separated by 102 nucleotides RPSI07_RS20545: RPSI07_RS20545 - channel protein TolC, at 2,782,300 to 2,783,754 _RS20545 RPSI07_RS20550: RPSI07_RS20550 - META domain-containing protein, at 2,783,762 to 2,784,517 _RS20550 RPSI07_RS20555: RPSI07_RS20555 - 3-deoxy-D-manno-octulosonic acid transferase, at 2,784,620 to 2,785,936 _RS20555 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -2 -1 0 1at 2782.828 kb on + strand, within RPSI07_RS20545at 2783.284 kb on + strand, within RPSI07_RS20545at 2783.398 kb on + strand, within RPSI07_RS20545at 2783.470 kb on + strand, within RPSI07_RS20545at 2783.656 kb on - strandat 2783.656 kb on - strandat 2784.033 kb on + strand, within RPSI07_RS20550at 2784.034 kb on - strand, within RPSI07_RS20550at 2784.174 kb on - strand, within RPSI07_RS20550at 2784.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,782,828 + RPSI07_RS20545 0.36 +0.2
2,783,284 + RPSI07_RS20545 0.68 -1.5
2,783,398 + RPSI07_RS20545 0.75 -0.8
2,783,470 + RPSI07_RS20545 0.80 +0.6
2,783,656 - -0.2
2,783,656 - +1.0
2,784,033 + RPSI07_RS20550 0.36 +1.3
2,784,034 - RPSI07_RS20550 0.36 -1.6
2,784,174 - RPSI07_RS20550 0.54 -0.4
2,784,566 - -1.8

Or see this region's nucleotide sequence