Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04465

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04455 and RPSI07_RS04460 are separated by 17 nucleotidesRPSI07_RS04460 and RPSI07_RS04465 are separated by 3 nucleotidesRPSI07_RS04465 and RPSI07_RS04470 are separated by 33 nucleotides RPSI07_RS04455: RPSI07_RS04455 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 1,204,170 to 1,205,357 _RS04455 RPSI07_RS04460: RPSI07_RS04460 - acetyltransferase, at 1,205,375 to 1,206,022 _RS04460 RPSI07_RS04465: RPSI07_RS04465 - sugar transferase, at 1,206,026 to 1,206,637 _RS04465 RPSI07_RS04470: RPSI07_RS04470 - glycosyltransferase WbuB, at 1,206,671 to 1,207,924 _RS04470 Position (kb) 1206 1207Strain fitness (log2 ratio) -3 -2 -1 0 1at 1205.208 kb on + strand, within RPSI07_RS04455at 1205.266 kb on + strandat 1205.266 kb on + strandat 1205.266 kb on + strandat 1205.377 kb on - strandat 1205.377 kb on - strandat 1205.377 kb on - strandat 1205.529 kb on + strand, within RPSI07_RS04460at 1205.529 kb on + strand, within RPSI07_RS04460at 1205.529 kb on + strand, within RPSI07_RS04460at 1205.530 kb on - strand, within RPSI07_RS04460at 1205.589 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.619 kb on + strand, within RPSI07_RS04460at 1205.620 kb on - strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.625 kb on + strand, within RPSI07_RS04460at 1205.626 kb on - strand, within RPSI07_RS04460at 1205.626 kb on - strand, within RPSI07_RS04460at 1205.626 kb on - strand, within RPSI07_RS04460at 1205.865 kb on + strand, within RPSI07_RS04460at 1206.041 kb on + strandat 1206.171 kb on + strand, within RPSI07_RS04465at 1206.171 kb on + strand, within RPSI07_RS04465at 1206.171 kb on + strand, within RPSI07_RS04465at 1206.171 kb on + strand, within RPSI07_RS04465at 1206.172 kb on - strand, within RPSI07_RS04465at 1206.173 kb on - strand, within RPSI07_RS04465at 1206.285 kb on + strand, within RPSI07_RS04465at 1206.286 kb on - strand, within RPSI07_RS04465at 1206.286 kb on - strand, within RPSI07_RS04465at 1206.297 kb on + strand, within RPSI07_RS04465at 1206.562 kb on - strand, within RPSI07_RS04465at 1206.928 kb on - strand, within RPSI07_RS04470at 1206.960 kb on + strand, within RPSI07_RS04470at 1206.961 kb on - strand, within RPSI07_RS04470at 1206.961 kb on - strand, within RPSI07_RS04470at 1206.993 kb on + strand, within RPSI07_RS04470at 1206.993 kb on + strand, within RPSI07_RS04470at 1206.994 kb on - strand, within RPSI07_RS04470at 1206.994 kb on - strand, within RPSI07_RS04470at 1206.994 kb on - strand, within RPSI07_RS04470at 1207.431 kb on + strand, within RPSI07_RS04470at 1207.431 kb on + strand, within RPSI07_RS04470at 1207.432 kb on - strand, within RPSI07_RS04470at 1207.617 kb on + strand, within RPSI07_RS04470at 1207.618 kb on - strand, within RPSI07_RS04470at 1207.618 kb on - strand, within RPSI07_RS04470

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,205,208 + RPSI07_RS04455 0.87 -2.1
1,205,266 + +0.6
1,205,266 + -1.4
1,205,266 + -0.5
1,205,377 - -0.6
1,205,377 - -1.1
1,205,377 - +0.6
1,205,529 + RPSI07_RS04460 0.24 -2.1
1,205,529 + RPSI07_RS04460 0.24 -1.8
1,205,529 + RPSI07_RS04460 0.24 -1.0
1,205,530 - RPSI07_RS04460 0.24 -1.0
1,205,589 + RPSI07_RS04460 0.33 -1.7
1,205,619 + RPSI07_RS04460 0.38 -1.6
1,205,619 + RPSI07_RS04460 0.38 -2.4
1,205,619 + RPSI07_RS04460 0.38 -1.3
1,205,619 + RPSI07_RS04460 0.38 +0.6
1,205,620 - RPSI07_RS04460 0.38 -1.0
1,205,625 + RPSI07_RS04460 0.39 -0.5
1,205,625 + RPSI07_RS04460 0.39 +0.6
1,205,625 + RPSI07_RS04460 0.39 -0.1
1,205,625 + RPSI07_RS04460 0.39 -3.1
1,205,625 + RPSI07_RS04460 0.39 +0.8
1,205,625 + RPSI07_RS04460 0.39 -0.7
1,205,625 + RPSI07_RS04460 0.39 -0.6
1,205,625 + RPSI07_RS04460 0.39 -0.4
1,205,625 + RPSI07_RS04460 0.39 -2.4
1,205,626 - RPSI07_RS04460 0.39 -0.6
1,205,626 - RPSI07_RS04460 0.39 -1.4
1,205,626 - RPSI07_RS04460 0.39 -2.0
1,205,865 + RPSI07_RS04460 0.76 -1.5
1,206,041 + -0.1
1,206,171 + RPSI07_RS04465 0.24 -0.9
1,206,171 + RPSI07_RS04465 0.24 -1.5
1,206,171 + RPSI07_RS04465 0.24 +0.2
1,206,171 + RPSI07_RS04465 0.24 -2.4
1,206,172 - RPSI07_RS04465 0.24 -1.4
1,206,173 - RPSI07_RS04465 0.24 -0.2
1,206,285 + RPSI07_RS04465 0.42 -0.3
1,206,286 - RPSI07_RS04465 0.42 +0.5
1,206,286 - RPSI07_RS04465 0.42 -0.5
1,206,297 + RPSI07_RS04465 0.44 -1.9
1,206,562 - RPSI07_RS04465 0.88 -0.2
1,206,928 - RPSI07_RS04470 0.20 -1.0
1,206,960 + RPSI07_RS04470 0.23 +0.3
1,206,961 - RPSI07_RS04470 0.23 +0.1
1,206,961 - RPSI07_RS04470 0.23 -0.5
1,206,993 + RPSI07_RS04470 0.26 -1.6
1,206,993 + RPSI07_RS04470 0.26 -2.3
1,206,994 - RPSI07_RS04470 0.26 -1.8
1,206,994 - RPSI07_RS04470 0.26 +0.2
1,206,994 - RPSI07_RS04470 0.26 -0.5
1,207,431 + RPSI07_RS04470 0.61 -1.6
1,207,431 + RPSI07_RS04470 0.61 -0.3
1,207,432 - RPSI07_RS04470 0.61 +0.1
1,207,617 + RPSI07_RS04470 0.75 -1.7
1,207,618 - RPSI07_RS04470 0.76 +0.3
1,207,618 - RPSI07_RS04470 0.76 +1.1

Or see this region's nucleotide sequence