Strain Fitness in Pseudomonas putida KT2440 around PP_4741

Experiment: Acetate Carbon Source (20mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4740 and PP_4741 are separated by 100 nucleotidesPP_4741 and PP_4742 overlap by 4 nucleotides PP_4740: PP_4740 - Type I restriction enzyme EcoAI R protein, at 5,393,059 to 5,395,422 _4740 PP_4741: PP_4741 - Type I restriction enzyme EcoEI M protein, at 5,395,523 to 5,396,992 _4741 PP_4742: PP_4742 - Type I restriction-modification system, S subunit, at 5,396,989 to 5,398,719 _4742 Position (kb) 5395 5396 5397Strain fitness (log2 ratio) -1 0 1 2 3at 5394.644 kb on - strand, within PP_4740at 5394.644 kb on - strand, within PP_4740at 5394.658 kb on - strand, within PP_4740at 5394.658 kb on - strand, within PP_4740at 5394.724 kb on + strand, within PP_4740at 5394.724 kb on + strand, within PP_4740at 5394.724 kb on + strand, within PP_4740at 5394.725 kb on - strand, within PP_4740at 5394.746 kb on + strand, within PP_4740at 5394.746 kb on + strand, within PP_4740at 5394.747 kb on - strand, within PP_4740at 5394.747 kb on - strand, within PP_4740at 5394.768 kb on - strand, within PP_4740at 5394.859 kb on + strand, within PP_4740at 5394.859 kb on + strand, within PP_4740at 5394.860 kb on - strand, within PP_4740at 5394.883 kb on + strand, within PP_4740at 5394.907 kb on + strand, within PP_4740at 5394.910 kb on + strand, within PP_4740at 5394.911 kb on - strand, within PP_4740at 5394.911 kb on - strand, within PP_4740at 5394.952 kb on + strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.953 kb on - strand, within PP_4740at 5394.960 kb on + strand, within PP_4740at 5394.960 kb on + strand, within PP_4740at 5395.200 kb on + strandat 5395.201 kb on - strandat 5395.204 kb on + strandat 5395.204 kb on + strandat 5395.205 kb on - strandat 5395.217 kb on - strandat 5395.217 kb on - strandat 5395.261 kb on + strandat 5395.261 kb on + strandat 5395.320 kb on + strandat 5395.350 kb on + strandat 5395.375 kb on + strandat 5395.386 kb on + strandat 5395.386 kb on + strandat 5395.386 kb on + strandat 5395.387 kb on - strandat 5395.412 kb on - strandat 5395.420 kb on + strandat 5395.421 kb on - strandat 5395.430 kb on + strandat 5395.431 kb on - strandat 5395.467 kb on + strandat 5395.467 kb on + strandat 5395.468 kb on - strandat 5395.468 kb on - strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.484 kb on + strandat 5395.485 kb on - strandat 5395.485 kb on - strandat 5395.485 kb on - strandat 5395.522 kb on + strandat 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.679 kb on + strand, within PP_4741at 5395.680 kb on - strand, within PP_4741at 5395.680 kb on - strand, within PP_4741at 5395.680 kb on - strand, within PP_4741at 5395.766 kb on - strand, within PP_4741at 5395.766 kb on - strand, within PP_4741at 5395.808 kb on + strand, within PP_4741at 5395.809 kb on - strand, within PP_4741at 5395.809 kb on - strand, within PP_4741at 5395.859 kb on + strand, within PP_4741at 5395.859 kb on + strand, within PP_4741at 5395.859 kb on + strand, within PP_4741at 5395.860 kb on - strand, within PP_4741at 5395.865 kb on + strand, within PP_4741at 5395.865 kb on + strand, within PP_4741at 5395.866 kb on - strand, within PP_4741at 5395.965 kb on - strand, within PP_4741at 5395.965 kb on - strand, within PP_4741at 5396.015 kb on + strand, within PP_4741at 5396.015 kb on + strand, within PP_4741at 5396.015 kb on + strand, within PP_4741at 5396.016 kb on - strand, within PP_4741at 5396.016 kb on - strand, within PP_4741at 5396.016 kb on - strand, within PP_4741at 5396.144 kb on + strand, within PP_4741at 5396.145 kb on - strand, within PP_4741at 5396.145 kb on - strand, within PP_4741at 5396.145 kb on - strand, within PP_4741at 5396.149 kb on - strand, within PP_4741at 5396.149 kb on - strand, within PP_4741at 5396.149 kb on - strand, within PP_4741at 5396.335 kb on + strand, within PP_4741at 5396.336 kb on - strand, within PP_4741at 5396.336 kb on - strand, within PP_4741at 5396.336 kb on - strand, within PP_4741at 5396.436 kb on + strand, within PP_4741at 5396.437 kb on - strand, within PP_4741at 5396.443 kb on + strand, within PP_4741at 5396.480 kb on + strand, within PP_4741at 5396.482 kb on - strand, within PP_4741at 5396.664 kb on - strand, within PP_4741at 5396.898 kb on + strandat 5396.898 kb on + strandat 5396.898 kb on + strandat 5396.898 kb on + strandat 5396.899 kb on - strandat 5396.909 kb on + strandat 5396.910 kb on - strandat 5396.910 kb on - strandat 5396.910 kb on - strandat 5396.910 kb on - strandat 5396.910 kb on - strandat 5396.940 kb on + strandat 5396.961 kb on + strandat 5396.989 kb on - strandat 5396.999 kb on + strandat 5397.088 kb on - strandat 5397.108 kb on + strandat 5397.209 kb on + strand, within PP_4742at 5397.240 kb on - strand, within PP_4742at 5397.240 kb on - strand, within PP_4742at 5397.329 kb on + strand, within PP_4742at 5397.387 kb on + strand, within PP_4742at 5397.387 kb on + strand, within PP_4742at 5397.582 kb on - strand, within PP_4742at 5397.656 kb on + strand, within PP_4742at 5397.740 kb on + strand, within PP_4742at 5397.749 kb on + strand, within PP_4742at 5397.749 kb on + strand, within PP_4742at 5397.981 kb on + strand, within PP_4742

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetate Carbon Source (20mM)
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5,394,644 - PP_4740 0.67 +1.7
5,394,644 - PP_4740 0.67 -0.9
5,394,658 - PP_4740 0.68 -0.2
5,394,658 - PP_4740 0.68 +1.3
5,394,724 + PP_4740 0.70 +0.2
5,394,724 + PP_4740 0.70 +0.2
5,394,724 + PP_4740 0.70 -1.6
5,394,725 - PP_4740 0.70 +0.7
5,394,746 + PP_4740 0.71 -0.0
5,394,746 + PP_4740 0.71 +0.3
5,394,747 - PP_4740 0.71 -0.7
5,394,747 - PP_4740 0.71 +0.8
5,394,768 - PP_4740 0.72 +0.1
5,394,859 + PP_4740 0.76 +0.8
5,394,859 + PP_4740 0.76 +0.5
5,394,860 - PP_4740 0.76 +0.5
5,394,883 + PP_4740 0.77 -0.3
5,394,907 + PP_4740 0.78 -0.2
5,394,910 + PP_4740 0.78 +0.1
5,394,911 - PP_4740 0.78 +0.3
5,394,911 - PP_4740 0.78 -0.3
5,394,952 + PP_4740 0.80 +0.7
5,394,953 - PP_4740 0.80 -0.0
5,394,953 - PP_4740 0.80 -0.0
5,394,953 - PP_4740 0.80 -0.0
5,394,953 - PP_4740 0.80 -0.2
5,394,953 - PP_4740 0.80 +0.8
5,394,960 + PP_4740 0.80 -0.5
5,394,960 + PP_4740 0.80 +0.9
5,395,200 + -0.2
5,395,201 - -0.8
5,395,204 + +0.5
5,395,204 + +0.9
5,395,205 - +0.1
5,395,217 - +0.5
5,395,217 - +1.5
5,395,261 + -0.4
5,395,261 + +0.4
5,395,320 + +0.1
5,395,350 + +0.3
5,395,375 + -0.3
5,395,386 + +0.2
5,395,386 + +0.3
5,395,386 + +1.1
5,395,387 - +0.3
5,395,412 - +3.3
5,395,420 + +1.3
5,395,421 - -0.3
5,395,430 + +0.1
5,395,431 - +1.3
5,395,467 + -0.6
5,395,467 + -0.8
5,395,468 - -1.7
5,395,468 - +0.7
5,395,484 + +0.0
5,395,484 + +0.6
5,395,484 + +0.1
5,395,484 + +0.3
5,395,484 + -0.2
5,395,484 + -0.0
5,395,484 + +0.7
5,395,484 + -0.1
5,395,485 - +1.0
5,395,485 - -0.7
5,395,485 - -0.2
5,395,522 + +0.1
5,395,679 + PP_4741 0.11 +0.9
5,395,679 + PP_4741 0.11 +0.9
5,395,679 + PP_4741 0.11 -1.2
5,395,679 + PP_4741 0.11 -0.7
5,395,679 + PP_4741 0.11 -1.5
5,395,679 + PP_4741 0.11 +1.1
5,395,680 - PP_4741 0.11 -0.7
5,395,680 - PP_4741 0.11 -0.4
5,395,680 - PP_4741 0.11 +0.8
5,395,766 - PP_4741 0.17 +0.5
5,395,766 - PP_4741 0.17 +0.0
5,395,808 + PP_4741 0.19 +0.2
5,395,809 - PP_4741 0.19 +0.8
5,395,809 - PP_4741 0.19 -0.1
5,395,859 + PP_4741 0.23 +0.0
5,395,859 + PP_4741 0.23 +0.0
5,395,859 + PP_4741 0.23 +0.5
5,395,860 - PP_4741 0.23 -1.1
5,395,865 + PP_4741 0.23 +1.9
5,395,865 + PP_4741 0.23 +0.6
5,395,866 - PP_4741 0.23 -0.2
5,395,965 - PP_4741 0.30 +0.8
5,395,965 - PP_4741 0.30 +0.3
5,396,015 + PP_4741 0.33 +1.1
5,396,015 + PP_4741 0.33 +0.5
5,396,015 + PP_4741 0.33 +1.0
5,396,016 - PP_4741 0.34 +0.4
5,396,016 - PP_4741 0.34 +0.6
5,396,016 - PP_4741 0.34 +1.2
5,396,144 + PP_4741 0.42 -0.0
5,396,145 - PP_4741 0.42 +1.0
5,396,145 - PP_4741 0.42 +0.3
5,396,145 - PP_4741 0.42 +1.1
5,396,149 - PP_4741 0.43 +0.3
5,396,149 - PP_4741 0.43 +0.3
5,396,149 - PP_4741 0.43 +1.0
5,396,335 + PP_4741 0.55 +0.6
5,396,336 - PP_4741 0.55 -0.5
5,396,336 - PP_4741 0.55 +0.8
5,396,336 - PP_4741 0.55 +0.1
5,396,436 + PP_4741 0.62 +0.1
5,396,437 - PP_4741 0.62 -0.5
5,396,443 + PP_4741 0.63 -0.2
5,396,480 + PP_4741 0.65 +1.6
5,396,482 - PP_4741 0.65 +0.4
5,396,664 - PP_4741 0.78 +0.3
5,396,898 + -0.2
5,396,898 + -0.1
5,396,898 + -0.1
5,396,898 + -0.3
5,396,899 - -0.1
5,396,909 + -0.5
5,396,910 - +0.2
5,396,910 - +1.1
5,396,910 - +0.3
5,396,910 - -0.6
5,396,910 - -0.2
5,396,940 + +0.5
5,396,961 + -0.2
5,396,989 - +0.6
5,396,999 + -0.8
5,397,088 - +0.8
5,397,108 + +0.4
5,397,209 + PP_4742 0.13 -1.7
5,397,240 - PP_4742 0.15 +0.3
5,397,240 - PP_4742 0.15 +1.4
5,397,329 + PP_4742 0.20 +0.1
5,397,387 + PP_4742 0.23 -0.7
5,397,387 + PP_4742 0.23 +0.1
5,397,582 - PP_4742 0.34 -1.1
5,397,656 + PP_4742 0.39 +0.3
5,397,740 + PP_4742 0.43 +0.5
5,397,749 + PP_4742 0.44 -0.1
5,397,749 + PP_4742 0.44 +0.2
5,397,981 + PP_4742 0.57 +0.1

Or see this region's nucleotide sequence