Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20585 and ABIE41_RS20590 are separated by 46 nucleotides ABIE41_RS20590 and ABIE41_RS20595 are separated by 10 nucleotides ABIE41_RS20595 and ABIE41_RS20600 are separated by 1 nucleotides ABIE41_RS20600 and ABIE41_RS20605 are separated by 73 nucleotides
ABIE41_RS20585: ABIE41_RS20585 - ABC transporter substrate-binding protein, at 4,231,829 to 4,232,827
_RS20585
ABIE41_RS20590: ABIE41_RS20590 - MaoC/PaaZ C-terminal domain-containing protein, at 4,232,874 to 4,233,383
_RS20590
ABIE41_RS20595: ABIE41_RS20595 - ABC transporter ATP-binding protein, at 4,233,394 to 4,234,218
_RS20595
ABIE41_RS20600: ABIE41_RS20600 - enoyl-CoA hydratase-related protein, at 4,234,220 to 4,235,011
_RS20600
ABIE41_RS20605: ABIE41_RS20605 - ABC transporter ATP-binding protein, at 4,235,085 to 4,236,182
_RS20605
Position (kb)
4233
4234
4235 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4232.774 kb on + strand at 4232.774 kb on + strand at 4232.774 kb on + strand at 4232.774 kb on + strand at 4232.775 kb on - strand at 4232.775 kb on - strand at 4232.775 kb on - strand at 4232.775 kb on - strand at 4232.777 kb on + strand at 4232.778 kb on - strand at 4232.790 kb on - strand at 4232.899 kb on - strand at 4232.904 kb on + strand at 4232.905 kb on - strand at 4233.025 kb on - strand, within ABIE41_RS20590 at 4233.205 kb on - strand, within ABIE41_RS20590 at 4233.811 kb on + strand, within ABIE41_RS20595 at 4233.812 kb on - strand, within ABIE41_RS20595 at 4233.812 kb on - strand, within ABIE41_RS20595 at 4234.138 kb on + strand at 4234.138 kb on + strand at 4234.139 kb on - strand at 4235.090 kb on - strand at 4235.090 kb on - strand at 4235.090 kb on - strand at 4235.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 4,232,774 + +0.4 4,232,774 + -3.7 4,232,774 + -0.5 4,232,774 + +2.3 4,232,775 - -2.7 4,232,775 - -0.2 4,232,775 - -0.1 4,232,775 - -0.7 4,232,777 + -0.7 4,232,778 - -2.7 4,232,790 - +2.3 4,232,899 - +0.6 4,232,904 + +0.6 4,232,905 - +1.6 4,233,025 - ABIE41_RS20590 0.30 +0.4 4,233,205 - ABIE41_RS20590 0.65 +0.2 4,233,811 + ABIE41_RS20595 0.51 -1.0 4,233,812 - ABIE41_RS20595 0.51 +0.3 4,233,812 - ABIE41_RS20595 0.51 -2.3 4,234,138 + -1.4 4,234,138 + -0.7 4,234,139 - -0.9 4,235,090 - +0.9 4,235,090 - +0.2 4,235,090 - +1.3 4,235,090 - -1.0
Or see this region's nucleotide sequence