Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20595

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS20585 and ABIE41_RS20590 are separated by 46 nucleotidesABIE41_RS20590 and ABIE41_RS20595 are separated by 10 nucleotidesABIE41_RS20595 and ABIE41_RS20600 are separated by 1 nucleotidesABIE41_RS20600 and ABIE41_RS20605 are separated by 73 nucleotides ABIE41_RS20585: ABIE41_RS20585 - ABC transporter substrate-binding protein, at 4,231,829 to 4,232,827 _RS20585 ABIE41_RS20590: ABIE41_RS20590 - MaoC/PaaZ C-terminal domain-containing protein, at 4,232,874 to 4,233,383 _RS20590 ABIE41_RS20595: ABIE41_RS20595 - ABC transporter ATP-binding protein, at 4,233,394 to 4,234,218 _RS20595 ABIE41_RS20600: ABIE41_RS20600 - enoyl-CoA hydratase-related protein, at 4,234,220 to 4,235,011 _RS20600 ABIE41_RS20605: ABIE41_RS20605 - ABC transporter ATP-binding protein, at 4,235,085 to 4,236,182 _RS20605 Position (kb) 4233 4234 4235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4232.774 kb on + strandat 4232.774 kb on + strandat 4232.774 kb on + strandat 4232.774 kb on + strandat 4232.775 kb on - strandat 4232.775 kb on - strandat 4232.775 kb on - strandat 4232.775 kb on - strandat 4232.777 kb on + strandat 4232.778 kb on - strandat 4232.790 kb on - strandat 4232.899 kb on - strandat 4232.904 kb on + strandat 4232.905 kb on - strandat 4233.025 kb on - strand, within ABIE41_RS20590at 4233.205 kb on - strand, within ABIE41_RS20590at 4233.811 kb on + strand, within ABIE41_RS20595at 4233.812 kb on - strand, within ABIE41_RS20595at 4233.812 kb on - strand, within ABIE41_RS20595at 4234.138 kb on + strandat 4234.138 kb on + strandat 4234.139 kb on - strandat 4235.090 kb on - strandat 4235.090 kb on - strandat 4235.090 kb on - strandat 4235.090 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
4,232,774 + +0.4
4,232,774 + -3.7
4,232,774 + -0.5
4,232,774 + +2.3
4,232,775 - -2.7
4,232,775 - -0.2
4,232,775 - -0.1
4,232,775 - -0.7
4,232,777 + -0.7
4,232,778 - -2.7
4,232,790 - +2.3
4,232,899 - +0.6
4,232,904 + +0.6
4,232,905 - +1.6
4,233,025 - ABIE41_RS20590 0.30 +0.4
4,233,205 - ABIE41_RS20590 0.65 +0.2
4,233,811 + ABIE41_RS20595 0.51 -1.0
4,233,812 - ABIE41_RS20595 0.51 +0.3
4,233,812 - ABIE41_RS20595 0.51 -2.3
4,234,138 + -1.4
4,234,138 + -0.7
4,234,139 - -0.9
4,235,090 - +0.9
4,235,090 - +0.2
4,235,090 - +1.3
4,235,090 - -1.0

Or see this region's nucleotide sequence