Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18705

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18695 and ABIE41_RS18700 are separated by 226 nucleotidesABIE41_RS18700 and ABIE41_RS18705 are separated by 165 nucleotidesABIE41_RS18705 and ABIE41_RS18710 are separated by 47 nucleotides ABIE41_RS18695: ABIE41_RS18695 - flagellar biosynthesis protein FlgA, at 3,848,853 to 3,850,256 _RS18695 ABIE41_RS18700: ABIE41_RS18700 - hypothetical protein, at 3,850,483 to 3,850,836 _RS18700 ABIE41_RS18705: ABIE41_RS18705 - amidohydrolase family protein, at 3,851,002 to 3,851,283 _RS18705 ABIE41_RS18710: ABIE41_RS18710 - TRAP transporter substrate-binding protein, at 3,851,331 to 3,852,338 _RS18710 Position (kb) 3851 3852Strain fitness (log2 ratio) -2 -1 0 1at 3850.237 kb on + strandat 3850.237 kb on + strandat 3850.238 kb on - strandat 3850.332 kb on + strandat 3850.332 kb on + strandat 3850.333 kb on - strandat 3850.348 kb on + strandat 3850.348 kb on + strandat 3850.348 kb on + strandat 3850.348 kb on + strandat 3850.348 kb on + strandat 3850.349 kb on - strandat 3850.349 kb on - strandat 3850.482 kb on + strandat 3850.482 kb on + strandat 3850.482 kb on + strandat 3850.482 kb on + strandat 3850.483 kb on - strandat 3850.528 kb on + strand, within ABIE41_RS18700at 3850.528 kb on + strand, within ABIE41_RS18700at 3851.037 kb on + strand, within ABIE41_RS18705at 3851.037 kb on + strand, within ABIE41_RS18705at 3851.038 kb on - strand, within ABIE41_RS18705at 3851.226 kb on + strand, within ABIE41_RS18705at 3851.226 kb on + strand, within ABIE41_RS18705at 3851.226 kb on + strand, within ABIE41_RS18705at 3851.227 kb on - strand, within ABIE41_RS18705at 3851.272 kb on + strandat 3851.272 kb on + strandat 3851.272 kb on + strandat 3851.273 kb on - strandat 3851.273 kb on - strandat 3851.281 kb on + strandat 3851.281 kb on + strandat 3851.282 kb on - strandat 3851.282 kb on - strandat 3851.282 kb on - strandat 3851.472 kb on + strand, within ABIE41_RS18710at 3851.473 kb on - strand, within ABIE41_RS18710at 3851.473 kb on - strand, within ABIE41_RS18710at 3851.473 kb on - strand, within ABIE41_RS18710at 3851.674 kb on - strand, within ABIE41_RS18710at 3851.788 kb on - strand, within ABIE41_RS18710at 3851.826 kb on + strand, within ABIE41_RS18710at 3851.826 kb on + strand, within ABIE41_RS18710at 3851.826 kb on + strand, within ABIE41_RS18710at 3851.827 kb on - strand, within ABIE41_RS18710at 3851.827 kb on - strand, within ABIE41_RS18710at 3852.013 kb on - strand, within ABIE41_RS18710at 3852.013 kb on - strand, within ABIE41_RS18710at 3852.013 kb on - strand, within ABIE41_RS18710at 3852.116 kb on + strand, within ABIE41_RS18710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,850,237 + +0.8
3,850,237 + +0.6
3,850,238 - +0.4
3,850,332 + -0.7
3,850,332 + +1.1
3,850,333 - +0.1
3,850,348 + +0.4
3,850,348 + -1.4
3,850,348 + +0.1
3,850,348 + +0.5
3,850,348 + -2.3
3,850,349 - -0.2
3,850,349 - -0.4
3,850,482 + +0.3
3,850,482 + +0.7
3,850,482 + -2.4
3,850,482 + -0.2
3,850,483 - -0.2
3,850,528 + ABIE41_RS18700 0.13 -0.6
3,850,528 + ABIE41_RS18700 0.13 -0.7
3,851,037 + ABIE41_RS18705 0.12 -0.2
3,851,037 + ABIE41_RS18705 0.12 +0.7
3,851,038 - ABIE41_RS18705 0.13 +0.2
3,851,226 + ABIE41_RS18705 0.79 +1.6
3,851,226 + ABIE41_RS18705 0.79 -0.5
3,851,226 + ABIE41_RS18705 0.79 +0.5
3,851,227 - ABIE41_RS18705 0.80 +0.8
3,851,272 + +0.7
3,851,272 + -0.3
3,851,272 + +0.8
3,851,273 - -0.3
3,851,273 - -0.1
3,851,281 + -1.5
3,851,281 + -1.7
3,851,282 - -0.7
3,851,282 - -0.2
3,851,282 - +0.3
3,851,472 + ABIE41_RS18710 0.14 -0.2
3,851,473 - ABIE41_RS18710 0.14 -0.4
3,851,473 - ABIE41_RS18710 0.14 -0.6
3,851,473 - ABIE41_RS18710 0.14 -1.0
3,851,674 - ABIE41_RS18710 0.34 -0.6
3,851,788 - ABIE41_RS18710 0.45 -1.0
3,851,826 + ABIE41_RS18710 0.49 +0.8
3,851,826 + ABIE41_RS18710 0.49 +0.3
3,851,826 + ABIE41_RS18710 0.49 +0.6
3,851,827 - ABIE41_RS18710 0.49 +0.2
3,851,827 - ABIE41_RS18710 0.49 -0.2
3,852,013 - ABIE41_RS18710 0.68 +0.9
3,852,013 - ABIE41_RS18710 0.68 -0.3
3,852,013 - ABIE41_RS18710 0.68 +0.3
3,852,116 + ABIE41_RS18710 0.78 +0.3

Or see this region's nucleotide sequence