Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18525

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18520 and ABIE41_RS18525 are separated by 55 nucleotidesABIE41_RS18525 and ABIE41_RS18530 are separated by 48 nucleotides ABIE41_RS18520: ABIE41_RS18520 - flagellar biosynthesis protein FlgA, at 3,812,519 to 3,813,922 _RS18520 ABIE41_RS18525: ABIE41_RS18525 - GntR family transcriptional regulator, at 3,813,978 to 3,814,643 _RS18525 ABIE41_RS18530: ABIE41_RS18530 - mannonate dehydratase, at 3,814,692 to 3,815,885 _RS18530 Position (kb) 3813 3814 3815Strain fitness (log2 ratio) -3 -2 -1 0 1at 3813.069 kb on - strand, within ABIE41_RS18520at 3813.530 kb on + strand, within ABIE41_RS18520at 3813.530 kb on + strand, within ABIE41_RS18520at 3813.531 kb on - strand, within ABIE41_RS18520at 3813.531 kb on - strand, within ABIE41_RS18520at 3813.618 kb on - strand, within ABIE41_RS18520at 3813.618 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3813.771 kb on - strand, within ABIE41_RS18520at 3814.005 kb on - strandat 3814.356 kb on + strand, within ABIE41_RS18525at 3814.356 kb on + strand, within ABIE41_RS18525at 3814.381 kb on - strand, within ABIE41_RS18525at 3815.281 kb on + strand, within ABIE41_RS18530at 3815.281 kb on + strand, within ABIE41_RS18530at 3815.282 kb on - strand, within ABIE41_RS18530at 3815.318 kb on - strand, within ABIE41_RS18530at 3815.326 kb on + strand, within ABIE41_RS18530at 3815.327 kb on - strand, within ABIE41_RS18530at 3815.462 kb on + strand, within ABIE41_RS18530at 3815.463 kb on - strand, within ABIE41_RS18530at 3815.482 kb on + strand, within ABIE41_RS18530at 3815.483 kb on - strand, within ABIE41_RS18530at 3815.483 kb on - strand, within ABIE41_RS18530at 3815.575 kb on + strand, within ABIE41_RS18530at 3815.575 kb on + strand, within ABIE41_RS18530at 3815.626 kb on + strand, within ABIE41_RS18530at 3815.626 kb on + strand, within ABIE41_RS18530at 3815.626 kb on + strand, within ABIE41_RS18530at 3815.627 kb on - strand, within ABIE41_RS18530at 3815.627 kb on - strand, within ABIE41_RS18530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,813,069 - ABIE41_RS18520 0.39 +0.5
3,813,530 + ABIE41_RS18520 0.72 -1.2
3,813,530 + ABIE41_RS18520 0.72 +0.4
3,813,531 - ABIE41_RS18520 0.72 -0.3
3,813,531 - ABIE41_RS18520 0.72 +0.6
3,813,618 - ABIE41_RS18520 0.78 -1.1
3,813,618 - ABIE41_RS18520 0.78 -0.4
3,813,771 - ABIE41_RS18520 0.89 -1.0
3,813,771 - ABIE41_RS18520 0.89 -1.1
3,813,771 - ABIE41_RS18520 0.89 -1.4
3,814,005 - +1.1
3,814,356 + ABIE41_RS18525 0.57 +1.6
3,814,356 + ABIE41_RS18525 0.57 +0.1
3,814,381 - ABIE41_RS18525 0.61 +0.3
3,815,281 + ABIE41_RS18530 0.49 -2.1
3,815,281 + ABIE41_RS18530 0.49 -0.1
3,815,282 - ABIE41_RS18530 0.49 -0.2
3,815,318 - ABIE41_RS18530 0.52 +0.2
3,815,326 + ABIE41_RS18530 0.53 -0.8
3,815,327 - ABIE41_RS18530 0.53 +0.6
3,815,462 + ABIE41_RS18530 0.64 -0.8
3,815,463 - ABIE41_RS18530 0.65 +0.5
3,815,482 + ABIE41_RS18530 0.66 +0.3
3,815,483 - ABIE41_RS18530 0.66 -2.8
3,815,483 - ABIE41_RS18530 0.66 +0.6
3,815,575 + ABIE41_RS18530 0.74 +0.9
3,815,575 + ABIE41_RS18530 0.74 +0.2
3,815,626 + ABIE41_RS18530 0.78 -1.6
3,815,626 + ABIE41_RS18530 0.78 -0.0
3,815,626 + ABIE41_RS18530 0.78 -1.4
3,815,627 - ABIE41_RS18530 0.78 +0.1
3,815,627 - ABIE41_RS18530 0.78 +0.7

Or see this region's nucleotide sequence