Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15650 and ABIE41_RS15655 are separated by 163 nucleotides ABIE41_RS15655 and ABIE41_RS15660 are separated by 174 nucleotides ABIE41_RS15660 and ABIE41_RS15665 are separated by 22 nucleotides
ABIE41_RS15650: ABIE41_RS15650 - methyltransferase domain-containing protein, at 3,204,446 to 3,205,084
_RS15650
ABIE41_RS15655: ABIE41_RS15655 - TolC family outer membrane protein, at 3,205,248 to 3,206,645
_RS15655
ABIE41_RS15660: ABIE41_RS15660 - DUF2497 domain-containing protein, at 3,206,820 to 3,207,395
_RS15660
ABIE41_RS15665: ABIE41_RS15665 - hypothetical protein, at 3,207,418 to 3,207,648
_RS15665
Position (kb)
3205
3206
3207 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3204.263 kb on + strand at 3205.082 kb on + strand at 3205.146 kb on + strand at 3205.146 kb on + strand at 3205.147 kb on - strand at 3205.147 kb on - strand at 3205.173 kb on + strand at 3205.173 kb on + strand at 3205.173 kb on + strand at 3205.177 kb on + strand at 3205.177 kb on + strand at 3205.178 kb on - strand at 3205.178 kb on - strand at 3205.698 kb on + strand, within ABIE41_RS15655 at 3205.698 kb on + strand, within ABIE41_RS15655 at 3205.699 kb on - strand, within ABIE41_RS15655 at 3206.088 kb on + strand, within ABIE41_RS15655 at 3206.127 kb on + strand, within ABIE41_RS15655 at 3206.128 kb on - strand, within ABIE41_RS15655 at 3206.196 kb on + strand, within ABIE41_RS15655 at 3206.196 kb on + strand, within ABIE41_RS15655 at 3206.197 kb on - strand, within ABIE41_RS15655 at 3206.197 kb on - strand, within ABIE41_RS15655 at 3206.574 kb on + strand at 3206.574 kb on + strand at 3207.287 kb on + strand, within ABIE41_RS15660 at 3207.288 kb on - strand, within ABIE41_RS15660 at 3207.288 kb on - strand, within ABIE41_RS15660
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,204,263 + +0.0 3,205,082 + -0.2 3,205,146 + +0.4 3,205,146 + +1.0 3,205,147 - -1.7 3,205,147 - +2.4 3,205,173 + +0.7 3,205,173 + +2.4 3,205,173 + -0.4 3,205,177 + +0.6 3,205,177 + -0.1 3,205,178 - -0.0 3,205,178 - +0.5 3,205,698 + ABIE41_RS15655 0.32 -2.3 3,205,698 + ABIE41_RS15655 0.32 -0.8 3,205,699 - ABIE41_RS15655 0.32 -0.2 3,206,088 + ABIE41_RS15655 0.60 -0.8 3,206,127 + ABIE41_RS15655 0.63 +0.1 3,206,128 - ABIE41_RS15655 0.63 -0.3 3,206,196 + ABIE41_RS15655 0.68 -0.6 3,206,196 + ABIE41_RS15655 0.68 -1.2 3,206,197 - ABIE41_RS15655 0.68 -1.8 3,206,197 - ABIE41_RS15655 0.68 -0.9 3,206,574 + +1.2 3,206,574 + +0.6 3,207,287 + ABIE41_RS15660 0.81 -1.4 3,207,288 - ABIE41_RS15660 0.81 +2.6 3,207,288 - ABIE41_RS15660 0.81 -1.0
Or see this region's nucleotide sequence